View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2711_high_27 (Length: 298)
Name: NF2711_high_27
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 1836971 - 1837267
Alignment:
| Q |
1 |
ccagagatggcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaacttgcaaacactcttcctcgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1836971 |
ccagagatggcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaacttgcaaacactcttcctcgtc |
1837070 |
T |
|
| Q |
101 |
ctctaagcaacaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagag------ccaacatgttggcgccaccagataacaacag |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
1837071 |
ctctaagcaacaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagagccaacaccaacatgttggcgccactagataacaacag |
1837170 |
T |
|
| Q |
195 |
tggaacag---gctcagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcgattaatgattcgcctatg |
288 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1837171 |
tggaacaggctgctcagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcgattaacgattcgcctatg |
1837267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University