View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_high_32 (Length: 252)
Name: NF2711_high_32
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 46476805 - 46476571
Alignment:
| Q |
1 |
atgtgccaggaaccaggaaaaatggaatctgaatttgcgaaaggtggcccagaactgctgatcaagaacatgcttacaagtaggaattctgggccaccaa |
100 |
Q |
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| T |
46476805 |
atgtgccaggaaccaggaaaaatggaatctgaatttgcgaaaggtggcccagaactgctgatcaagaacatgcttacaagtaggaattctgggccaccaa |
46476706 |
T |
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| Q |
101 |
tcctaccaaaagaaggcgtgatacctaatccacatgcttccggtacaaaggctctcccttcttggctctcacaagaagatatcacttactatgcttctaa |
200 |
Q |
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| T |
46476705 |
tcctaccaaaagaaggcgtgatacctaatccacatgcttccggtacaaaggctctcccttcttggctctcacaagaagatatcacttactatgcttctaa |
46476606 |
T |
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| Q |
201 |
atttgaaaagacaggattcagtggtgcccttaact |
235 |
Q |
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| T |
46476605 |
atttgaaaagacaggattcagtggtgcccttaact |
46476571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 46514970 - 46514736
Alignment:
| Q |
1 |
atgtgccaggaaccaggaaaaatggaatctgaatttgcgaaaggtggcccagaactgctgatcaagaacatgcttacaagtaggaattctgggccaccaa |
100 |
Q |
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| T |
46514970 |
atgtgacaggaaccagggaaagcagaagccgaatttggcaaaggtagcccagaactagtgatcaaggcaatgcttaccggtcggaattctgggccattaa |
46514871 |
T |
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| Q |
101 |
tcctaccaaaagaaggcgtgatacctaatccacatgcttccggtacaaaggctctcccttcttggctctcacaagaagatatcacttactatgcttctaa |
200 |
Q |
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| T |
46514870 |
ttctacccaaagaaggcttgttatctcatcccgatgtttcaaatacaaagcccctcccttcttggctctcacaagaagatgtcgcttactatgcttctaa |
46514771 |
T |
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| Q |
201 |
atttgaaaagacaggattcagtggtgcccttaact |
235 |
Q |
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| T |
46514770 |
atttgaaaagactggatttagtggtggccttaact |
46514736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 46484266 - 46484038
Alignment:
| Q |
7 |
caggaaccaggaaaaatggaatctgaatttgcgaaaggtggcccagaactgctgatcaagaacatgcttacaagtaggaattctgggccaccaatcctac |
106 |
Q |
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||||||||||| ||||||||| ||||| |||| ||||| | |||||||| ||||||| ||||||||||||| | ||| ||||||| |||||||| | |
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| T |
46484266 |
caggaaccagggaaaatggaagctgaaattgctaaaggaagttcagaactgttgatcaaagccatgcttacaagtcgtaatcctgggccgccaatcctgc |
46484167 |
T |
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| Q |
107 |
caaaagaaggcgtgatacctaatccacatgcttccggtacaaaggctctcccttcttggctctcacaagaagatatcacttactatgcttctaaatttga |
206 |
Q |
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| T |
46484166 |
ccaaagaaggcatattatctcatcccagcgtttcaagtacaatgccccttccttcttggctcacactagaagatgttgcttactatgcttccaaatttga |
46484067 |
T |
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| Q |
207 |
aaagacaggattcagtggtgcccttaact |
235 |
Q |
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| T |
46484066 |
acagacaggattcagcggtggtcttaact |
46484038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 46493559 - 46493467
Alignment:
| Q |
143 |
gtacaaaggctctcccttcttggctctcacaagaagatatcacttactatgcttctaaatttgaaaagacaggattcagtggtgcccttaact |
235 |
Q |
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| T |
46493559 |
gtacaaagcccctcccttcttggctctcacaagaagatgttgcttattatgcatctaaatttgaaaagactggatttagtggtggccttaact |
46493467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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