View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2711_high_4 (Length: 689)

Name: NF2711_high_4
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2711_high_4
NF2711_high_4
[»] chr5 (1 HSPs)
chr5 (16-689)||(1836309-1836984)


Alignment Details
Target: chr5 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 16 - 689
Target Start/End: Original strand, 1836309 - 1836984
Alignment:
Q  16 ttaattatatgagattccacgaatttgaattagtggtattctaaaatcccatgacacctaagttctgaaaacgcgttatgaaacaggggactgaattgtg 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1836309 ttaattatatgagattccacgaatttggattagtggtattctaaaatcccatgacacctaagttctgaaaacgcgttatgaaacaggggactgaattgtg 1836408  T
Q  116 tcacttaatccaattctttattattgctccataaacattgcgccaatccattcccataatttcaagttcaaaagtggtcacacacatgtcactctaacat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1836409 tcacttaatccaattctttattattgctccataaacattgcgccaatccattcccataatttcaagttcaaaagtggtcacacacatgtcactctaacat 1836508  T
Q  216 taattaccatgctcttaatttcactttcagtcaacatttaatatacaatataaaaatctgatccgtgctaaattgcacataagcattttcacaattaaat 315  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1836509 taattaccatgctcttaatttcactttcaatcaacatttaatatacaatataaaaatctcatccgtgctaaattgcacataagcattttcacaattaaat 1836608  T
Q  316 aaactaagtnnnnnnnnn--gtgtagcagcacatacaaacacaaattttgtgcacctacgaggaaactcacttccaaagagtttcacctgaaagctaggt 413  Q
    |||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1836609 aaactaagtaaaaaaaaaaagtgtagcagcacatacaaacacaaattttgtgcacctacgaggaaactcacttccaaagagtttcacctgaaagctaggt 1836708  T
Q  414 acgcacaatcacaatatctataaatacctttctatggcatagacaaaatttctcactagaaagtatcaatatcaagtaccaactaacatggacataatta 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||    
T  1836709 acgcacaatcacaatatctataaatacctttctatggcatagacaaaatttctcactagaaagtaacaatatcaagtaccaactaacattgacataaata 1836808  T
Q  514 tatttcgataaaaactatacttaatttgcatgaacaatgtcttcaagtggtgctgctagttctgcatacagaggagtccgtaagagaaaatggggtaaat 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1836809 tatttcgataaaaactatacttaatttgcatgaacaatgtcttcaagtggtgctgctagttctgcatacagaggagtccgtaagagaaaatggggtaaat 1836908  T
Q  614 gggtttccgaaattcgtgagcccggcaccaaaacaagaatctggttaggaagtttcgagacaccagagatggcagc 689  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1836909 gggtttccgaaattcgcgagcccggcaccaaaacaagaatctggttaggaagtttcgagacaccagagatggcagc 1836984  T

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