View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_high_42 (Length: 231)
Name: NF2711_high_42
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_high_42 |
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| [»] scaffold0067 (1 HSPs) |
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| [»] scaffold1107 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 31036798 - 31036595
Alignment:
| Q |
17 |
gatgtttggaatgatttgaaggagagttttgcacaaggtaatttggtacgaatttctgaataaatgcaagaaatttactcttcgtaacaagattctaagt |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31036798 |
gatgtttggaatgatttgaaggagcgttttgcacaaggtaatttggtacgaatttctgaataaatgctagaaatttactcttcgtaacaagattctaagt |
31036699 |
T |
|
| Q |
117 |
ctgttacttctttctaccatgagttgaagattttgtgggaggaacttgagatttacatgcatttacctaactgcacttatagggtacgtttttcttgtga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
31036698 |
ctgttacttctttctaccatgagttgaagattttgtgggaggaacttgagatttacatgcatttacctaactgcacttatagggtaggttggtcttgtga |
31036599 |
T |
|
| Q |
217 |
tttt |
220 |
Q |
| |
|
|||| |
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|
| T |
31036598 |
tttt |
31036595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 2994912 - 2995028
Alignment:
| Q |
17 |
gatgtttggaatgatttgaaggagagttttgcacaaggtaatttggtacgaatttctgaataaatgcaagaaatttactcttcgtaacaagattctaagt |
116 |
Q |
| |
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||||| ||||||||| | ||||| | ||||| |||||| ||||||| || ||||||||| ||||||||||| || |||| |||||||||| || | |
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| T |
2994912 |
gatgtgtggaatgatcttaaggaacggtttgctcaaggtgatttggttcgtatttctgaacttatgcaagaaatctattctttacaacaagattcaaaat |
2995011 |
T |
|
| Q |
117 |
ctgttacttctttctac |
133 |
Q |
| |
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|||||||| ||||||| |
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| T |
2995012 |
ctgttactaatttctac |
2995028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 13758 - 13559
Alignment:
| Q |
17 |
gatgtttggaatgatttgaaggagagttttgcacaaggtaatttggtacgaatttctgaataaatgcaagaaatttactcttcgtaacaagattctaagt |
116 |
Q |
| |
|
|||||||||| |||||| ||||| |||| |||||||| |||||||| |||| ||||||| |||||||||||||||| ||| | ||||||||||||||| |
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| T |
13758 |
gatgtttggagtgatttaaaggaacgtttcgcacaaggcgatttggtatgaatatctgaattaatgcaagaaatttacactttgcaacaagattctaagt |
13659 |
T |
|
| Q |
117 |
ctgttacttctttctaccatgagttgaagattttgtgggaggaacttgagatttacatgcatttacctaactgcacttatagggtacgtttttcttgtga |
216 |
Q |
| |
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||||||||||||||||| |||| |||||||| ||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |
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| T |
13658 |
ctgttacttctttctactccgagtggaagatttcgtgggaggatcttgagatttacatgcatgtacctaactgcacttgtagggtacgttgttcttgtga |
13559 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1107 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold1107
Description:
Target: scaffold1107; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 227 - 28
Alignment:
| Q |
17 |
gatgtttggaatgatttgaaggagagttttgcacaaggtaatttggtacgaatttctgaataaatgcaagaaatttactcttcgtaacaagattctaagt |
116 |
Q |
| |
|
|||||||||| |||||| ||||| |||| |||||||| |||||||| |||| ||||||| |||||||||||||||| ||| | ||||||||||||||| |
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| T |
227 |
gatgtttggagtgatttaaaggaacgtttcgcacaaggcgatttggtatgaatatctgaattaatgcaagaaatttacactttgcaacaagattctaagt |
128 |
T |
|
| Q |
117 |
ctgttacttctttctaccatgagttgaagattttgtgggaggaacttgagatttacatgcatttacctaactgcacttatagggtacgtttttcttgtga |
216 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |
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| T |
127 |
ttgttacttctttctactccgagtggaagatttcgtgggaggatcttgagatttacatgcatgtacctaactgcacttgtagggtacgttgttcttgtga |
28 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 19474471 - 19474312
Alignment:
| Q |
17 |
gatgtttggaatgatttgaaggagagttttgcacaaggtaatttggtacgaatttctgaataaatgcaagaaatttactcttcgtaacaagattctaagt |
116 |
Q |
| |
|
|||||||||||||||||||| || | ||| |||| ||| |||||||| ||||||||||| |||||||||||||| | ||| |||||||||| || |
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| T |
19474471 |
gatgtttggaatgatttgaatgaacgcttttcacatggtgatttggtaagaatttctgaactcatgcaagaaatttatgcatcgcaacaagattccaaaa |
19474372 |
T |
|
| Q |
117 |
ctgttact-tctttctaccatgagttgaagattttgtgggaggaacttgagatttacatgc |
176 |
Q |
| |
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|| ||||| ||||| ||| |||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
19474371 |
ctattactatcttt-tactctgagttgaagattttgtgggaggaacttcatatttacatgc |
19474312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 37190486 - 37190602
Alignment:
| Q |
17 |
gatgtttggaatgatttgaaggagagttttgcacaaggtaatttggtacgaatttctgaataaatgcaagaaatttactcttcgtaacaagattctaagt |
116 |
Q |
| |
|
||||| ||||||||| | ||||| ||||||| |||||| ||||||| || ||||||||| ||||||||||| || |||| |||||||||| || | |
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| T |
37190486 |
gatgtgtggaatgatcttaaggaacgttttgctcaaggtgatttggttcgtatttctgaacttatgcaagaaatctattctttacaacaagattcaaaat |
37190585 |
T |
|
| Q |
117 |
ctgttacttctttctac |
133 |
Q |
| |
|
|||||||| ||||||| |
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| T |
37190586 |
ctgttactaatttctac |
37190602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 22465508 - 22465372
Alignment:
| Q |
80 |
atgcaagaaatttactcttcgtaacaagattctaagtctgttacttctttctaccatgagttgaagattttgtgggaggaacttgagatttacatgcatt |
179 |
Q |
| |
|
|||||| ||||||| |||| | ||||||||||||| | |||||| ||||||||| || |||||||||| ||||||||||| |||| ||||||||| || |
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|
| T |
22465508 |
atgcaaaaaatttattctttgcaacaagattctaaatatgttacatctttctactctgggttgaagattctgtgggaggaatttgaaatttacatgtatg |
22465409 |
T |
|
| Q |
180 |
tacctaactgcacttatagggtacgtttttcttgtga |
216 |
Q |
| |
|
| | ||| ||||||| || |||| || ||||||||| |
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|
| T |
22465408 |
ttcgtaattgcacttgtatagtacattgttcttgtga |
22465372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 33458049 - 33458165
Alignment:
| Q |
17 |
gatgtttggaatgatttgaaggagagttttgcacaaggtaatttggtacgaatttctgaataaatgcaagaaatttactcttcgtaacaagattctaagt |
116 |
Q |
| |
|
||||| ||||||||| | ||||| ||||||| |||||| ||||||| || ||||||||| |||||||||||||| ||| |||||||||| || | |
|
|
| T |
33458049 |
gatgtgtggaatgatcttaaggaacgttttgctcaaggtgatttggttcgtatttctgaacttatgcaagaaatttattctgtacaacaagattcaaaat |
33458148 |
T |
|
| Q |
117 |
ctgttacttctttctac |
133 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
33458149 |
ctgttactaatttctac |
33458165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 34822207 - 34822323
Alignment:
| Q |
17 |
gatgtttggaatgatttgaaggagagttttgcacaaggtaatttggtacgaatttctgaataaatgcaagaaatttactcttcgtaacaagattctaagt |
116 |
Q |
| |
|
||||| ||||||||| | ||||| ||||||| |||||| ||||||| || ||||||||| ||||||||||| || |||| |||||||||| || | |
|
|
| T |
34822207 |
gatgtgtggaatgatcttaaggaacgttttgctcaaggtgatttggttcgtatttctgaacttatgcaagaaatctattctttacaacaagattcaaaat |
34822306 |
T |
|
| Q |
117 |
ctgttacttctttctac |
133 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
34822307 |
ctgttactaatttctac |
34822323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 25422760 - 25422691
Alignment:
| Q |
29 |
gatttgaaggagagttttgcacaaggtaatttggtacgaatttctgaataaatgcaagaaatttactctt |
98 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||| |||| ||||||| |||||||| |||||||||| |
|
|
| T |
25422760 |
gatttgaaggaacgattcgcacaaggtgatttggtaagaatctctgaattgatgcaagagatttactctt |
25422691 |
T |
|
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