View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_high_5 (Length: 668)
Name: NF2711_high_5
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Original strand, 10341039 - 10341691
Alignment:
| Q |
1 |
agaagcaaagtatgatgattatatgataaaagtcactttaagagttatattccatatataaaggaacataattatatcacccttgacatttgtcattttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10341039 |
agaagcaaagtatgatgattatatgataaaagtcactttaagagttatattccatatataaaggaacataattatatcacccttgacatttgtcattttc |
10341138 |
T |
|
| Q |
101 |
attagatgttaggtatttagtcatataagcaacnnnnnnnggagtgatggtggttacaaagagttgtttctttcaatgattgagggtttcatgatggttt |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10341139 |
attagatgttaggtatttagtcatataagcaacaaaaaaaggagtgatggtggttacaaagagttgtttctttcaatgattgagggtttcatgatggttt |
10341238 |
T |
|
| Q |
201 |
taataaatcaacaaagctaaggaagtagttctggtatggtccaaaagggtgaccaaacctgcaccacttgggtgggccagattgtctgagatccactttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10341239 |
-aataaatcaacaaagctaaggaagtagttctggtatagtccaaaagggtgaccaaacctgcaccaattgggtgggccagattgtctgagatccactttg |
10341337 |
T |
|
| Q |
301 |
agattgagttgagcttatggtgtcgtccgagtctcgaatagatcattcactgaacgcacattggtttttagagtgttcgagtgattgagctcaagtgatt |
400 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10341338 |
agattgagttgagcttatggtgtcgtcggagtctcgaatagatcattcactaaacgcacattggtttttagagtactcgagtgattgagctcaagtgatt |
10341437 |
T |
|
| Q |
401 |
aatgagtttcacttaaggacagatcgttcaggagaatccaaattcaaatcctaaatggaataattcatagccagactttacatgtcacttgtcttctaac |
500 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10341438 |
aatgagtttcacttaaggacagatcgttcacgagaatccgaattcaaatcctaaatggaataattcatagccagactttacatgtcacttgtcttctaac |
10341537 |
T |
|
| Q |
501 |
tgaatttcagattaccaaaatatgagagaaccagagggttaac---acaacaacaacaaaaatgacactattgccttccattatactaggctgctagcaa |
597 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10341538 |
tgaatttaagattaccaaaatatgagagaaccagagggttaacacaacaacaacaacaaaaatgacactattgccttccattatactaggctgctagcaa |
10341637 |
T |
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| Q |
598 |
tagttcaaccttggtagtatagttatagagacatttccgatctcaacaacatat |
651 |
Q |
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| T |
10341638 |
tagttcaaccttggtagtatagttatagagacatttccgatctcaacaacatat |
10341691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 13126424 - 13126360
Alignment:
| Q |
380 |
agtgattgagctcaagtgattaatgagtttcacttaaggacagatcgttcaggagaatccaaatt |
444 |
Q |
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|||||||||||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
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| T |
13126424 |
agtgattgagctcaagtggttaatgagtttcaccaaaggacgtatcgttcgagagaacccaaatt |
13126360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 38753592 - 38753632
Alignment:
| Q |
380 |
agtgattgagctcaagtgattaatgagtttcacttaaggac |
420 |
Q |
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|||| ||||||||||||| ||||||||||||| |||||||| |
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| T |
38753592 |
agtggttgagctcaagtggttaatgagtttcatttaaggac |
38753632 |
T |
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