View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2711_high_9 (Length: 481)

Name: NF2711_high_9
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2711_high_9
NF2711_high_9
[»] chr7 (5 HSPs)
chr7 (8-474)||(29212899-29213366)
chr7 (256-360)||(21130580-21130684)
chr7 (108-174)||(21108334-21108400)
chr7 (257-360)||(21098528-21098631)
chr7 (257-360)||(21108147-21108250)
[»] chr3 (15 HSPs)
chr3 (8-465)||(47212137-47212592)
chr3 (257-360)||(26713976-26714079)
chr3 (75-360)||(26737029-26737315)
chr3 (256-360)||(26690366-26690470)
chr3 (256-360)||(26731677-26731781)
chr3 (257-360)||(26698824-26698927)
chr3 (257-360)||(26733987-26734090)
chr3 (257-360)||(26751148-26751251)
chr3 (259-360)||(26694527-26694628)
chr3 (123-231)||(26713841-26713950)
chr3 (123-172)||(26698689-26698738)
chr3 (123-172)||(26733852-26733901)
chr3 (123-174)||(26675477-26675528)
chr3 (257-360)||(26744223-26744326)
chr3 (123-172)||(26744088-26744137)
[»] chr4 (1 HSPs)
chr4 (101-174)||(39132245-39132318)


Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Original strand, 29212899 - 29213366
Alignment:
Q  8 gtaagctcttgtttcttgtatcttcgaaaaactagatagtttagaatccttactgtttctcaatttggacaaaccaaaatttgaaacttttgattgataa 107  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29212899 gtaacctcttgtttcttgtatcttcgaaaaactagataatttagaatccttcctgtttctcaatttggacaaaccaaaatttgaaacttttgattgataa 29212998  T
Q  108 ttagaatccaaaagaatgttttgtggcttcacatcacaaggcaaaatccactccaaacactcttcatagatataagc-aaaccttttgcagtacctaaag 206  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  29212999 ttagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcataaatataagccaaaccttttgcagtacctaaag 29213098  T
Q  207 ccatgccaaatctttttctccaatccaaggtataagaccttaaatgttgcgctaaagaaccattatacatgaactcatagacaaacattctatgtgttcc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29213099 ccatgccaaatctttttctccaatccaaggtataagaccttaaatgttgtgctaaagaaccattatacatgaactcatagacaaacattctatgtattcc 29213198  T
Q  307 ctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttccaatattgctaattactttggcttggaactcttcttcaccttgattagct 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29213199 ctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttccaatattgctaattactttggcttggaactcttcttcaccttgattagct 29213298  T
Q  407 tccttgagtctcttcgctgtaacaacttgttgatacaacaatccacctttctaaacaatcccctatgc 474  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||    
T  29213299 tccttgagtctcttcgctgtaacaacttgttgatacaacaatacacctttgtaaacaatcccttatgc 29213366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 360
Target Start/End: Original strand, 21130580 - 21130684
Alignment:
Q  256 cgctaaagaaccattatacatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagcttt 355  Q
    ||||||||||||||| | |||| ||||||| || || ||||||||  | || ||  ||||||| ||||||| ||||||||||||||||||||||||||||    
T  21130580 cgctaaagaaccattttccatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaaattcatgtggttaagcttt 21130679  T
Q  356 ccaat 360  Q
     ||||    
T  21130680 tcaat 21130684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 21108400 - 21108334
Alignment:
Q  108 ttagaatccaaaagaatgttttgtggcttcacatcacaaggcaaaatccactccaaacactcttcat 174  Q
    |||||||| | ||| |||||||||||||| | ||||||| ||||||||||||||||||| |||||||    
T  21108400 ttagaatcaagaagtatgttttgtggctttatatcacaatgcaaaatccactccaaacattcttcat 21108334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 360
Target Start/End: Complemental strand, 21098631 - 21098528
Alignment:
Q  257 gctaaagaaccattatacatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttc 356  Q
    |||||||||||||| | |||| |||| || || || | ||||| | ||||||| || ||||| ||||||| ||| |||||||||||||| |||||| |||    
T  21098631 gctaaagaaccattttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttc 21098532  T
Q  357 caat 360  Q
    ||||    
T  21098531 caat 21098528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 360
Target Start/End: Complemental strand, 21108250 - 21108147
Alignment:
Q  257 gctaaagaaccattatacatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttc 356  Q
    |||||||||||||| | |||| |||| || || || | ||||| | ||||||| || ||||| ||||||| ||| |||||||||||||| |||||| |||    
T  21108250 gctaaagaaccattttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttc 21108151  T
Q  357 caat 360  Q
    ||||    
T  21108150 caat 21108147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 47212137 - 47212592
Alignment:
Q  8 gtaagctcttgtttcttgtatcttcgaaaaactagatagtttagaatccttactgtttctcaatttggacaaaccaaaatttgaaacttttgattgataa 107  Q
    |||| |||||||| || ||||||||||||||||||| | |||||||||||| |||||||||||||| ||||||||||||| |||||  |||| |||||||    
T  47212137 gtaacctcttgttcctcgtatcttcgaaaaactagagaatttagaatccttcctgtttctcaatttcgacaaaccaaaatctgaaatctttggttgataa 47212236  T
Q  108 ttagaatccaaaagaatgttttgtggcttcacatcacaaggcaaaatccactccaaacactcttcatagatataag-caaaccttttgcagtacctaaag 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  47212237 ttagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagccaaaccttttgcagtgcctaaag 47212336  T
Q  207 ccatgccaaatctttttctccaatccaaggtataagaccttaaatgttgcgctaaagaaccattatacatgaactcatagacaaacattctatgtgttcc 306  Q
    | ||| |||||||||||| |||||||||  ||| |||| ||| |||||  |||||||||||||||| |||||||||||| |||| |||||||||| ||||    
T  47212337 ctatgtcaaatctttttccccaatccaatttattagactttatatgttctgctaaagaaccattatccatgaactcatacacaagcattctatgttttcc 47212436  T
Q  307 ctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttccaatattgctaattactttggcttggaactcttcttcaccttgattagct 406  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||  ||||||  ||  | ||||||||||| |||||||| |||    
T  47212437 ctctgcacaataaccccacatttcaatcaaattcatgtggttaagctttccaa---tgctgcttacttctgcgagaaactcttcttcgccttgatttgct 47212533  T
Q  407 tccttgagtctcttcgctgtaacaacttgttgatacaacaatccacctttctaaacaat 465  Q
    ||||||||||||||| | |  |||||| |||||| ||||||| ||||||| ||||||||    
T  47212534 tccttgagtctcttcaccgcgacaactcgttgatccaacaatacacctttgtaaacaat 47212592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 360
Target Start/End: Original strand, 26713976 - 26714079
Alignment:
Q  257 gctaaagaaccattatacatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttc 356  Q
    ||||||| |||||| | |||| ||||||| || |||| | ||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||| |||    
T  26713976 gctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaatcaaattcatgtggttaagccttc 26714075  T
Q  357 caat 360  Q
    ||||    
T  26714076 caat 26714079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 360
Target Start/End: Original strand, 26737029 - 26737315
Alignment:
Q  75 gacaaaccaaaatttgaaacttttgattgataattagaatccaaaagaatgttttgtggcttcacatcacaaggcaaaatccactccaaacactcttcat 174  Q
    ||||||||||||| || ||| || | | |||||| ||| || | ||| |||||||| ||||| | ||| ||| |||||||||||||||||||||||||||    
T  26737029 gacaaaccaaaatctgcaaccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcat 26737128  T
Q  175 agatataagcaa-accttttgcagtacctaaagccatgccaaatctttttctccaatccaaggt-ataagaccttaaatgttgcgctaaagaaccattat 272  Q
      | |||||||| || ||||||||| |||| ||| || ||| |||| |||| |||||| ||| | ||  ||    | ||  |  ||||||| |||||| |    
T  26737129 gtaaataagcaagacattttgcagttcctatagcaataccatatctctttccccaatc-aagttcatttgatgagagattatcagctaaagtaccatttt 26737227  T
Q  273 acatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttccaat 360  Q
     |||| ||||||| || |||| | ||||| ||||||| |||||||||||||||| | |||| |||||||||||||||||| |||||||    
T  26737228 ccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaattaaattcatgtggttaagccttccaat 26737315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 360
Target Start/End: Complemental strand, 26690470 - 26690366
Alignment:
Q  256 cgctaaagaaccattatacatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagcttt 355  Q
    |||||||||||| || | |||| ||||| | || |||| ||| ||| |||||||||||||||| |||||||   ||||||||||||||||||||||| ||    
T  26690470 cgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagcctt 26690371  T
Q  356 ccaat 360  Q
    |||||    
T  26690370 ccaat 26690366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 360
Target Start/End: Complemental strand, 26731781 - 26731677
Alignment:
Q  256 cgctaaagaaccattatacatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagcttt 355  Q
    |||||||||||| || | |||| ||||| | || |||| ||| ||| |||||||||||||||| |||||||   ||||||||||||||||||||||| ||    
T  26731781 cgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagcctt 26731682  T
Q  356 ccaat 360  Q
    |||||    
T  26731681 ccaat 26731677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 360
Target Start/End: Original strand, 26698824 - 26698927
Alignment:
Q  257 gctaaagaaccattatacatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttc 356  Q
    ||||||| |||||| | |||| ||||||| || |||| ||| ||| ||||||| |||||||||||||||| | | |||||||||||||| |||||| |||    
T  26698824 gctaaagtaccattttccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttc 26698923  T
Q  357 caat 360  Q
    ||||    
T  26698924 caat 26698927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 360
Target Start/End: Original strand, 26733987 - 26734090
Alignment:
Q  257 gctaaagaaccattatacatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttc 356  Q
    ||||||| |||||| | |||| ||||||| || |||| ||| ||| ||||||| |||||||||||||||| | | |||||||||||||| |||||| |||    
T  26733987 gctaaagtaccattttccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttc 26734086  T
Q  357 caat 360  Q
    ||||    
T  26734087 caat 26734090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 360
Target Start/End: Original strand, 26751148 - 26751251
Alignment:
Q  257 gctaaagaaccattatacatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttc 356  Q
    ||||||| ||| || | |||| ||||||| || |||| ||||||  ||||||| ||||||||||||||||   ||||||||||||||||||||||| |||    
T  26751148 gctaaagtacccttttccatgtactcataaaccaacaatctatgctttccctcagcacaataaccccacataccaatcaaattcatgtggttaagccttc 26751247  T
Q  357 caat 360  Q
    ||||    
T  26751248 caat 26751251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 360
Target Start/End: Complemental strand, 26694628 - 26694527
Alignment:
Q  259 taaagaaccattatacatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttcca 358  Q
    ||||||||| || | |||| ||||| | || |||| ||| ||| |||||||||||||||| |||||||   ||||||||||||||||||||||| |||||    
T  26694628 taaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttcca 26694529  T
Q  359 at 360  Q
    ||    
T  26694528 at 26694527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 26713841 - 26713950
Alignment:
Q  123 atgttttgtggcttcacatcacaaggcaaaatccactccaaacactcttcatagatataagcaa-accttttgcagtacctaaagccatgccaaatcttt 221  Q
    |||||||| ||||| | ||| ||| |||||||||||||||||||||||||||  | |||||||| || ||||||||| |||| ||| || ||| |||| |    
T  26713841 atgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcatgtaaataagcaagacattttgcagttcctatagcaataccatatctct 26713940  T
Q  222 ttctccaatc 231  Q
    ||| ||||||    
T  26713941 ttccccaatc 26713950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 26698689 - 26698738
Alignment:
Q  123 atgttttgtggcttcacatcacaaggcaaaatccactccaaacactcttc 172  Q
    |||||||||||||| | ||| ||| |||||||||||||||||||||||||    
T  26698689 atgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttc 26698738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 26733852 - 26733901
Alignment:
Q  123 atgttttgtggcttcacatcacaaggcaaaatccactccaaacactcttc 172  Q
    |||||||||||||| | ||| ||| |||||||||||||||||||||||||    
T  26733852 atgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttc 26733901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 26675477 - 26675528
Alignment:
Q  123 atgttttgtggcttcacatcacaaggcaaaatccactccaaacactcttcat 174  Q
    |||||||| ||||| | ||||||| ||||||||||||||||||| |||||||    
T  26675477 atgttttgaggctttatatcacaatgcaaaatccactccaaacattcttcat 26675528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 360
Target Start/End: Original strand, 26744223 - 26744326
Alignment:
Q  257 gctaaagaaccattatacatgaactcatagacaaacattctatgtgttccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttc 356  Q
    ||||||| ||| || | |||| |||| || || |||| ||||||| ||||||| |||||||| |||||||   |||| || ||||||||||||||| |||    
T  26744223 gctaaagtaccgttttccatgcactcgtaaaccaacaatctatgttttccctcagcacaatagccccacataccaattaagttcatgtggttaagccttc 26744322  T
Q  357 caat 360  Q
    ||||    
T  26744323 caat 26744326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 26744088 - 26744137
Alignment:
Q  123 atgttttgtggcttcacatcacaaggcaaaatccactccaaacactcttc 172  Q
    |||||||| ||||| | ||||||| ||||||||||||||||||| |||||    
T  26744088 atgttttgcggctttatatcacaatgcaaaatccactccaaacattcttc 26744137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 39132318 - 39132245
Alignment:
Q  101 ttgataattagaatccaaaagaatgttttgtggcttcacatcacaaggcaaaatccactccaaacactcttcat 174  Q
    |||||| |||||||| | ||| || ||||| ||||| | ||||||| | ||||||||||||||||| |||||||    
T  39132318 ttgatagttagaatcaagaagtatattttgaggctttatatcacaatgtaaaatccactccaaacattcttcat 39132245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University