View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_low_15 (Length: 417)
Name: NF2711_low_15
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 35407561 - 35407944
Alignment:
| Q |
17 |
aatatcattaccaaataaatgtcaaataattgagtattgattcttacannnnnnnncaaaagaaataaaggattaaattactataaattttaggtcatga |
116 |
Q |
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| T |
35407561 |
aatatcattaccaaataaatgtcaaataattgagtattgattcttacattttttttcaaaagaaataaaggattaaattactataaattttaggtcataa |
35407660 |
T |
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| Q |
117 |
ctaatatttagttaatgtcatcaatttnnnnnnngtgtgtgattactttaccatatgacactnnnnnnnntgtttttggagaaacagaagattcaacctc |
216 |
Q |
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| T |
35407661 |
ctaatatttagttaatgtcatcaatttaaaaaaagtgtgtgattactttaccat--gacactaaaaaaaatgtttttggagaaacagaagattcaacctc |
35407758 |
T |
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| Q |
217 |
aactgtttgatacactc--tatattattttaccatatgacattaaagatttagatataatgataactaaatcatgaatgcaagggttaaaatagtataaa |
314 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35407759 |
aactgtttgatacactcattatattattttaccatatgacattaaagatttagatataatgataactaaatcatgaatgcaagggttaaaatagtataaa |
35407858 |
T |
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| Q |
315 |
atttgatgcaaaatgtaactttcacagatagatctagcttgcaaatgattctggctgatccttaattaaacttcaagttgttatct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
35407859 |
atttgatgcaaaatgtaactttcacagatagatctagcttgcaaatgattctggttgatcctcaattaaacttcaagttgttatct |
35407944 |
T |
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