View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_low_16 (Length: 409)
Name: NF2711_low_16
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 373
Target Start/End: Complemental strand, 24425224 - 24424847
Alignment:
| Q |
7 |
acatcatcagtttttgtatcataaaagtactttccagtcacatgctttttctcttgcaaaactaaatttttccaataacaatccctaagaatgatgaatc |
106 |
Q |
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| T |
24425224 |
acatcatcaatttttgtatcataaaagtactttccagtcacatgctttttctcttgcaaaactaaatttttccaataacaatccctaagaatgatgaatc |
24425125 |
T |
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| Q |
107 |
tttgattcttcaattatatttctgat----------------tnnnnnnntattattaattctcttaatgacctacttcgacaatgagcttgaatgaata |
190 |
Q |
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||| |||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
24425124 |
tttcattcttcaattatatttctgattatgtttactttacattaaaaatatattattaattcttttaatgacttacttcgacaatgagcttgaatgaata |
24425025 |
T |
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| Q |
191 |
tatgatattgataagcatgatgaaaattgttcttacatttttcgagtcactctccagataaccaatctgaggaatcaaagaatacaccttccccatcatc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24425024 |
tatgatattgataagcatgatgaaaattgttcttacatttttcgagtcactctccagataactaatctgaggaatcaaagaatacaccttccccatcatc |
24424925 |
T |
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| Q |
291 |
cgtgtcatcagaatcagataatacaactccctgcatcatctcatcaccaacaaattcaaaattatagcgaggagaggaactac |
373 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24424924 |
cgtgtcatcagaatcagataatacaactccctgcat-----catcaccaacaaattcaaaattatagcgaggagaggaactac |
24424847 |
T |
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