View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_low_17 (Length: 408)
Name: NF2711_low_17
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 36885726 - 36886111
Alignment:
| Q |
18 |
aaggaaccaaatgatcttggtagatctcctgagaagttattgtatgaaaggtccctgaagaaaggaaatcaccctttgtgaggttccatttaatgaaatt |
117 |
Q |
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| T |
36885726 |
aaggaaccaaatgatcttggtagatctcctgagaagttattgtacgaaatgtccctgaagaaaggaaatcacccgttgtgaggttccatttaatgaaatt |
36885825 |
T |
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| Q |
118 |
tgaacataacagccagagcatctgcattttgttaatatcattttctcaaaacctagtcagatccaattttcattacacagtcttatcacatccctttaaa |
217 |
Q |
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|||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36885826 |
tgaacaaaacagtcagagcatctgcattttgtgaatatcattttctcaaaacctagtcagatccaattttcattacacagtcttatcacatccctttaaa |
36885925 |
T |
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| Q |
218 |
tcagtgaaacatacaaaatattatatttttataatcgatgcctttctcagttgcttttcaacttttttgtgtcttcaactaaatatagcaataaagagga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
36885926 |
tcagtgaaacatacaaaatattatatttttataatcgatgcctttctcaggtgcttttcaac--ttttgtgtcttcaataaaatatagcaataaagagga |
36886023 |
T |
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| Q |
318 |
gtacatatctatgttttggttttattaagtttgatttgaatgatttacgttaatatattaaatttcatatagttttaatgttacacat |
405 |
Q |
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| T |
36886024 |
gtacatatctatgttttggttttattaattttgatttgaatgatttactttaatatattaaattttatatagttttaatgttgcacat |
36886111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 22556222 - 22556284
Alignment:
| Q |
18 |
aaggaaccaaatgatcttggtagatctcctgagaagttattgtatgaaaggtccctgaagaaa |
80 |
Q |
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|||||||||||||| ||||| |||||||| | ||| ||||| || ||||||||||||| |||| |
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| T |
22556222 |
aaggaaccaaatgaacttggcagatctccagtgaaattattataagaaaggtccctgatgaaa |
22556284 |
T |
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