View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2711_low_19 (Length: 386)

Name: NF2711_low_19
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2711_low_19
NF2711_low_19
[»] chr5 (14 HSPs)
chr5 (11-372)||(42783179-42783540)
chr5 (29-372)||(41227878-41228225)
chr5 (15-345)||(27173215-27173545)
chr5 (22-345)||(32642904-32643236)
chr5 (20-143)||(42564971-42565094)
chr5 (83-143)||(42840513-42840573)
chr5 (83-143)||(39724571-39724631)
chr5 (263-327)||(43322992-43323056)
chr5 (83-142)||(40549285-40549344)
chr5 (91-146)||(43322816-43322871)
chr5 (85-134)||(9764510-9764559)
chr5 (90-146)||(41996220-41996276)
chr5 (86-146)||(42262378-42262438)
chr5 (83-143)||(42414002-42414062)
[»] chr1 (1 HSPs)
chr1 (22-341)||(51874506-51874830)
[»] chr2 (3 HSPs)
chr2 (73-143)||(44937797-44937867)
chr2 (86-151)||(7435216-7435281)
chr2 (83-143)||(44918486-44918546)
[»] chr6 (4 HSPs)
chr6 (26-143)||(21378470-21378587)
chr6 (72-143)||(21374379-21374450)
chr6 (86-161)||(34281937-34282012)
chr6 (28-150)||(29300039-29300161)
[»] chr8 (10 HSPs)
chr8 (91-143)||(6117909-6117961)
chr8 (83-143)||(15338149-15338209)
chr8 (83-143)||(15427214-15427274)
chr8 (83-143)||(15518518-15518578)
chr8 (91-142)||(12711784-12711835)
chr8 (83-138)||(15600584-15600639)
chr8 (83-138)||(15631867-15631922)
chr8 (85-143)||(26607075-26607133)
chr8 (84-134)||(27183901-27183951)
chr8 (82-135)||(13472933-13472986)
[»] chr3 (1 HSPs)
chr3 (88-135)||(2703734-2703781)
[»] chr7 (1 HSPs)
chr7 (83-161)||(42446353-42446431)
[»] scaffold0054 (1 HSPs)
scaffold0054 (73-161)||(39802-39890)


Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Original strand, 42783179 - 42783540
Alignment:
Q  11 cacagaaacaattggtggtgttaaatggatacattgccttgatcacttatgaagaccaaacgactacttgtaacatatcaattttgggtgaactaagtgt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42783179 cacagaaacaattggtggtgttaaatggatacattgccttgatcacttatgaagaccaaacgactacttgtaacatatcaattttgggtgaactaagtgt 42783278  T
Q  111 aaaagaatcatggattaaactctttattgttgggccgttgcattgcgttgaagaaccttttggaacgacaaagggtaaaataatcttcagaaagaaagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42783279 aaaagaatcatggattaaactctttattgttgggccgttgcattgcgttgaagaaccttttggaatgacaaagggtaaaataatcttcagaaagaaagac 42783378  T
Q  211 agagaaataaattggtttgacttaagaacccaaatgattgaggtgcttgatcttaaaggagaatattgtcatatagcagtttacaaggaagaccttcttc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42783379 agagaaataaattggtttgacttaagaacccaaatgattgaggtgcttgatcttaaaggagaatattgtaatatagcagtttacaaggaagaccttcttc 42783478  T
Q  311 caattggtggaataaataagtaattccttttcttggatatgacattgcatacaacttgatat 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42783479 caattggtggaataaataagtaattccttttcttggatatgacattgcatacaaattgatat 42783540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 29 - 372
Target Start/End: Original strand, 41227878 - 41228225
Alignment:
Q  29 tgttaaatggatacattgccttgatcacttatgaagaccaaacgactacttgtaacatat----caattttgggtgaactaagtgtaaaagaatcatgga 124  Q
    ||||||||| |||||||||||||||||| |||||||| |||| |||||||||||||||||    |||||| |||||||||||||||||||||||||||||    
T  41227878 tgttaaatgaatacattgccttgatcacatatgaagaacaaatgactacttgtaacatatatatcaatttcgggtgaactaagtgtaaaagaatcatgga 41227977  T
Q  125 ttaaactctttattgttgggccgttgcattgcgttgaagaaccttttggaacgacaaagggtaaaataatcttcagaaagaaagacagagaaataaattg 224  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  41227978 ttaaactcttcattgttgggccgttgcattgcgttgaagaaccttttggaatgacaaaggataaaataatcttcagaaagaaagacagagaaataaattg 41228077  T
Q  225 gtttgacttaagaacccaaatgattgaggtgcttgatcttaaaggagaatattgtcatatagcagtttacaaggaagaccttcttccaattggtggaata 324  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41228078 gtttgacttaagaacccaaatgattgaggtgcttcatcttgaaggagaatattgtcatatagcagtttacaaggaagaccttcttccaattggtggaata 41228177  T
Q  325 aataagtaattccttttcttggatatgacattgcatacaacttgatat 372  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||    
T  41228178 aataagtaattccttttcttggatatgacattgcatataaattgatat 41228225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 27173545 - 27173215
Alignment:
Q  15 gaaacaattggtggtgttaaatggatacattgccttgatcacttatgaagaccaaacgactacttgtaacatatcaattttgggtgaactaagtgtaaaa 114  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  27173545 gaaacaattggtggtgttaaatggatatattgccttgatcacatatgaagaacaaatgactacttgtaacatatcaattttgagtgaactaagtgtaaaa 27173446  T
Q  115 gaatcatggattaaactctttattgttgggccgttgcattgcgttgaagaaccttttggaacgacaaagggtaaaataatcttcagaaagaaagacagag 214  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  27173445 gaatcatggattaaactcttcattgttggaccgttgcattgcgttgaagaaccttttggaatggcaaagggtaaaataatcttcaaaaagaaagacagag 27173346  T
Q  215 aaataaattggtttgacttaagaacccaaatgattgaggtgcttgatcttaaaggagaatattgtcatatagcagtttacaaggaagaccttcttccaat 314  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  27173345 aaataaattggtttgacttaagaacccaaatgattgaggagcttgatattaaaggagaatattgtgatatagcagtttacaaggaaggccttcttccaat 27173246  T
Q  315 tggtggaataaataagtaattccttttcttg 345  Q
    |||||||||||||| ||||||||||||||||    
T  27173245 tggtggaataaatatgtaattccttttcttg 27173215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 22 - 345
Target Start/End: Original strand, 32642904 - 32643236
Alignment:
Q  22 ttggtggtgttaaatggatacattgccttgatcacttatgaagaccaaacgactacttgtaacatatcaattttgggtgaactaagtgtaaaagaatcat 121  Q
    |||| |||||||||||||| |||||| |||||||| ||| |||| |||| | |||||| |||||||||||||||| ||||| ||| ||| || |||||||    
T  32642904 ttggcggtgttaaatggatccattgcgttgatcacatatcaagaacaaatggctacttttaacatatcaattttgagtgaattaactgtgaaggaatcat 32643003  T
Q  122 ggattaaactctttattgttgggccgttgcattgcgttgaagaaccttttggaacgacaaagggtaaaataatcttcagaaagaaagacagagaaataaa 221  Q
    |||| |||||||| |||||||| ||  ||   || || ||    |||||||||  |  |||||| |||||| |||||| ||| ||||  | | || ||      
T  32643004 ggatcaaactcttcattgttggacctctgtcatgtgtcgagcgtccttttggagtgggaaagggcaaaatattcttcaaaaaaaaagttaaaaaactagc 32643103  T
Q  222 ttggtttgacttaagaacccaaatgattgaggtgcttgatcttaaaggagaatattgtcat---------atagcagtttacaaggaagaccttcttcca 312  Q
    ||||||||| ||||| ||||||||||||||||  |||||| ||||||||| | || ||| |         |||| ||||||||||||| |||||||||||    
T  32643104 ttggtttgatttaagtacccaaatgattgaggaccttgatgttaaaggaggagatagtcgtggttatcggatagtagtttacaaggaaaaccttcttcca 32643203  T
Q  313 attggtggaataaataagtaattccttttcttg 345  Q
    ||||||||||||||||||||| |||||||||||    
T  32643204 attggtggaataaataagtaaatccttttcttg 32643236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 42565094 - 42564971
Alignment:
Q  20 aattggtggtgttaaatggatacattgccttgatcacttatgaagaccaaacgactacttgtaacatatcaattttgggtgaactaagtgtaaaagaatc 119  Q
    ||||| |||||||||||||||  ||||| |||||||| ||| | ||  | |  ||||||| |||||||||| |||||||||||||| |||| || |||||    
T  42565094 aattgatggtgttaaatggatcgattgctttgatcacatatcacgagaagataactacttttaacatatcagttttgggtgaactaggtgtcaaggaatc 42564995  T
Q  120 atggattaaactctttattgttgg 143  Q
    |||||| ||||| || ||||||||    
T  42564994 atggatcaaacttttcattgttgg 42564971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 42840573 - 42840513
Alignment:
Q  83 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgg 143  Q
    |||| |||||||||||||||||  |||||||||||||||||| |||| |||||||||||||    
T  42840573 acatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttgg 42840513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 39724631 - 39724571
Alignment:
Q  83 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgg 143  Q
    |||||||||||||||| |||||  || ||||||||||||||| ||||||||| ||||||||    
T  39724631 acatatcaattttgggggaactcggtataaaagaatcatggactaaactcttcattgttgg 39724571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 43322992 - 43323056
Alignment:
Q  263 ttaaaggagaatattgtcatatagcagtttacaaggaagaccttcttccaattggtggaataaat 327  Q
    ||||||||||  |||||||||||| | ||||||||||| || | ||||||||||| |||||||||    
T  43322992 ttaaaggagagaattgtcatataggaatttacaaggaaaacatgcttccaattggaggaataaat 43323056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 40549285 - 40549344
Alignment:
Q  83 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttg 142  Q
    |||||||||||||||||||| |  |||| || ||||||||||| ||||||||| ||||||    
T  40549285 acatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 40549344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 43322816 - 43322871
Alignment:
Q  91 attttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgggcc 146  Q
    ||||||||||||||  |||||||  ||| |||||| ||||||||||||||||||||    
T  43322816 attttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgggcc 43322871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 9764510 - 9764559
Alignment:
Q  85 atatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctt 134  Q
    ||||||||||||||||||||  |||| || ||||||||||||| ||||||    
T  9764510 atatcaattttgggtgaacttggtgtcaaggaatcatggattagactctt 9764559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 41996276 - 41996220
Alignment:
Q  90 aattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgggcc 146  Q
    |||||||||||||||   |||||| |||||||||| ||| ||||| |||||||||||    
T  41996276 aattttgggtgaacttgatgtaaaggaatcatggactaagctcttcattgttgggcc 41996220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 42262378 - 42262438
Alignment:
Q  86 tatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgggcc 146  Q
    |||||||||||||| ||||  |||| | |||||||||||| || ||||||||||| |||||    
T  42262378 tatcaattttgggtaaacttggtgtgagagaatcatggataaatctctttattgtggggcc 42262438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 42414002 - 42414062
Alignment:
Q  83 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgg 143  Q
    |||| ||||||||||| ||| |  ||||||| || ||||||| ||||||||||||||||||    
T  42414002 acatttcaattttgggcgaatttggtgtaaaggagtcatggactaaactctttattgttgg 42414062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 341
Target Start/End: Complemental strand, 51874830 - 51874506
Alignment:
Q  22 ttggtggtgttaaatggatacattgccttgatcacttatgaagaccaaacgactacttgtaacatatcaattttgggtgaactaagtgtaaaagaatcat 121  Q
    |||||||||||||||| || ||||||||||||| | ||| | |  |||| |||||||| ||| || ||||||||||||||||||||||| || |||||||    
T  51874830 ttggtggtgttaaatgaatccattgccttgatctcatatcacgtacaaatgactacttttaatatttcaattttgggtgaactaagtgtgaaggaatcat 51874731  T
Q  122 ggattaaactctttattgttgggccgttgcattgcgttgaagaaccttttggaacgacaaagggtaaaataatcttcagaaagaaagacagagaaataaa 221  Q
    |||| ||||| ||  |||||||||| ||   ||||||||||   |||||| ||| |  ||| || |||||| |||||| ||| ||||||  |||| ||      
T  51874730 ggatcaaacttttccttgttgggccattatcttgcgttgaacgtccttttagaatggaaaatggcaaaatattcttcacaaaaaaagacgaagaactagt 51874631  T
Q  222 ttggtttgacttaagaacccaaatgattgaggtgcttgatcttaaaggagaa-----tattgtcatatagcagtttacaaggaagaccttcttccaattg 316  Q
    ||| |||||||||||||| |||||||| |||  ||||||| || || || ||     |||||| | |||| |||||| |||||| || ||||||||||||    
T  51874630 ttgatttgacttaagaactcaaatgatcgagaagcttgatattgaaagaaaagttcttattgtgagatagtagtttagaaggaaaactttcttccaattg 51874531  T
Q  317 gtggaataaataagtaattcctttt 341  Q
    | |||||||||||||||||||||||    
T  51874530 gcggaataaataagtaattcctttt 51874506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 44937867 - 44937797
Alignment:
Q  73 actacttgtaacatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgg 143  Q
    ||||||| | ||||||||||||||||||||||  | || ||||||||||||| |||||||||| |||||||    
T  44937867 actacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgttgg 44937797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 7435281 - 7435216
Alignment:
Q  86 tatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgggccgttgc 151  Q
    |||||||||| |||||| |  ||||||||||||| |||| ||| ||||| ||||||||| ||||||    
T  7435281 tatcaattttaggtgaaattggtgtaaaagaatcgtggactaagctcttcattgttgggtcgttgc 7435216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 44918546 - 44918486
Alignment:
Q  83 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgg 143  Q
    ||||||||||||| ||||||||  |||  |||||||| |||| |||||||||| |||||||    
T  44918546 acatatcaattttaggtgaacttggtgggaaagaatcgtggactaaactctttgttgttgg 44918486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 21378587 - 21378470
Alignment:
Q  26 tggtgttaaatggatacattgccttgatcacttatgaagaccaaacgactacttgtaacatatcaattttgggtgaactaagtgtaaaagaatcatggat 125  Q
    |||||||||||| || ||||||| || |||| ||| | ||  | | ||||||||  |||||||||||||| |||||| ||| ||| ||||||||||||||    
T  21378587 tggtgttaaatgaatccattgccctggtcacatatcacgaaaagaagactactttaaacatatcaattttaggtgaattaaatgtgaaagaatcatggat 21378488  T
Q  126 taaactctttattgttgg 143  Q
     |||||||| ||| ||||    
T  21378487 caaactcttcatttttgg 21378470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 21374450 - 21374379
Alignment:
Q  72 gactacttgtaacatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgg 143  Q
    |||||||| ||||||||||| ||| |||||  ||| ||| |||||||||||||| |||||||| ||||||||    
T  21374450 gactacttttaacatatcaaattttggtgagttaaatgtgaaagaatcatggatcaaactcttcattgttgg 21374379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 34281937 - 34282012
Alignment:
Q  86 tatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgggccgttgcattgcgttga 161  Q
    |||||||||||||| ||||  || | |||||||| ||||| ||||||||||| ||||| ||||||| || ||||||    
T  34281937 tatcaattttgggtcaactcggtttcaaagaatcgtggatcaaactctttatggttggaccgttgccttacgttga 34282012  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 29300039 - 29300161
Alignment:
Q  28 gtgttaaatggatacattgccttgatcacttatgaagaccaaacgactacttgtaacatatcaattttgggtgaactaagtgtaaaagaatcatggatta 127  Q
    ||||||||||| | ||||||||||||| | | | || |  | |||||||||| | ||||||||||||||||||| || ||| |||| ||||| ||||  |    
T  29300039 gtgttaaatgggtccattgccttgatctcatttcaaaaaaagacgactacttttcacatatcaattttgggtgagctcagtataaaggaatcgtggacca 29300138  T
Q  128 aactctttattgttgggccgttg 150  Q
    | ||||| | |||||| ||||||    
T  29300139 atctcttcaatgttggaccgttg 29300161  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 6117909 - 6117961
Alignment:
Q  91 attttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgg 143  Q
    ||||||||||||||  |||| |||||||| ||||||||||||||| |||||||    
T  6117909 attttgggtgaacttggtgttaaagaatcgtggattaaactctttgttgttgg 6117961  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 15338209 - 15338149
Alignment:
Q  83 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgg 143  Q
    ||||||||||||||||||||||  | || ||||||||||||| |||||| ||| |||||||    
T  15338209 acatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttgg 15338149  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 15427274 - 15427214
Alignment:
Q  83 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgg 143  Q
    ||||||||||||||||||||||  | || ||||||||||||| |||||| ||| |||||||    
T  15427274 acatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttgg 15427214  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 15518578 - 15518518
Alignment:
Q  83 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgg 143  Q
    ||||||||||||||||||||||  | || ||||||||||||| |||||| ||| |||||||    
T  15518578 acatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttgg 15518518  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 12711835 - 12711784
Alignment:
Q  91 attttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttg 142  Q
    ||||||||||||||  |||| |||||||| ||||||||||||||| ||||||    
T  12711835 attttgggtgaactcggtgttaaagaatcgtggattaaactctttgttgttg 12711784  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 15600639 - 15600584
Alignment:
Q  83 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttatt 138  Q
    |||| ||||||||||||||||   |||||| ||||||||||| |||||||||||||    
T  15600639 acatctcaattttgggtgaacccggtgtaatagaatcatggactaaactctttatt 15600584  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 15631922 - 15631867
Alignment:
Q  83 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttatt 138  Q
    |||| ||||||||||||||||   |||||| ||||||||||| |||||||||||||    
T  15631922 acatttcaattttgggtgaacccggtgtaatagaatcatggactaaactctttatt 15631867  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 26607075 - 26607133
Alignment:
Q  85 atatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgg 143  Q
    |||||| |||| || |||||  |||| |||||||||||||||||||||||| |||||||    
T  26607075 atatcagttttaggcgaactcggtgtgaaagaatcatggattaaactctttgttgttgg 26607133  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 27183901 - 27183951
Alignment:
Q  84 catatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctt 134  Q
    |||||| |||||||||||| |  |||| |||||||||||||||||||||||    
T  27183901 catatcgattttgggtgaaattggtgtcaaagaatcatggattaaactctt 27183951  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 13472986 - 13472933
Alignment:
Q  82 aacatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactcttt 135  Q
    ||||||||||||||||||||| |  |||| ||||||||||||| || |||||||    
T  13472986 aacatatcaattttgggtgaaatcggtgtcaaagaatcatggactagactcttt 13472933  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 2703734 - 2703781
Alignment:
Q  88 tcaattttgggtgaactaagtgtaaaagaatcatggattaaactcttt 135  Q
    |||||||||||||||||  |||| || |||||||||||||||||||||    
T  2703734 tcaattttgggtgaacttggtgtcaaggaatcatggattaaactcttt 2703781  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 42446353 - 42446431
Alignment:
Q  83 acatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgggccgttgcattgcgttga 161  Q
    ||||||||||||||||||||||   | | || ||||||||||  |||||| | |||||||| ||||||||||| |||||    
T  42446353 acatatcaattttgggtgaacttgctatcaaggaatcatggaccaaactcgtcattgttggaccgttgcattgtgttga 42446431  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 39890 - 39802
Alignment:
Q  73 actacttgtaacatatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgggccgttgcattgcgttga 161  Q
    ||||||| | ||||| ||||||||||||||||  |  | || ||||| ||||| |||||||||| |||||| ||||||  |||||||||    
T  39890 actacttttcacatagcaattttgggtgaactcggcattaaggaatcgtggatcaaactctttactgttggaccgttgtcttgcgttga 39802  T

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