View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_low_2 (Length: 844)
Name: NF2711_low_2
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 46813987 - 46814234
Alignment:
| Q |
18 |
caagaaaatccttaccataaaccttaagcttattctcatcagtagcttcatacccatgcgtattctcaaaagtacaattctgaaacttcaccaaaaacac |
117 |
Q |
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| T |
46813987 |
caagaaaatccttaccataaaccttaagcttattctcatcagtagcttcatacccatgcgtattctcaaaagtacaattctgaaacttcaccaaaaacgc |
46814086 |
T |
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| Q |
118 |
gtcaaaatcctgttcagtaaagaatttcatcgcccaaacacctttcgcaataaaatccacacgtcgctgatccgctagggttttcaattgcatttcacca |
217 |
Q |
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| T |
46814087 |
gtcaaaatcctgttcagtaaagaatttcatcgcccaaacacctttcgcaataaaatccacacgtcgctgatccgctagggttttcaattgcatttcacca |
46814186 |
T |
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| Q |
218 |
ccaacttttgacctaatttttgaaccaattttcaaaacccaaaaaccc |
265 |
Q |
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| T |
46814187 |
ccaacttttgacctaatttttgaaccaattttcaaaacccaaaaaccc |
46814234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 589 - 830
Target Start/End: Original strand, 46814558 - 46814798
Alignment:
| Q |
589 |
atcggaactttcgagtaaaccgtcgcggctgtgagcgccacccatttttggttttccggtgaggatttgatcggagacttaagaagaagaaaatgagagc |
688 |
Q |
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| T |
46814558 |
atcggaactttcgagtaaaccgtcgcggctgtgagcgccacccatttttggttttccggtgaggatttgatcggagacttaagaagaagaaaatgagagc |
46814657 |
T |
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| Q |
689 |
gccaagttcgaaatttgaaattggagtgtttttcgatttggatttagttagggtttatgaataggattgattgagatgtagccgtttgtgtgtggacccc |
788 |
Q |
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| T |
46814658 |
gccaagttcgaaatttgaaattggagtgtttttcgatttggatttggttagggtttatgaataggattgattgagatgtagccgtttgtgtgtggacccc |
46814757 |
T |
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| Q |
789 |
attgtcaccgtagaggcacgtggatgatgttggtttattgga |
830 |
Q |
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| T |
46814758 |
attgtcagcgt-gaggcacgtggatgatgttggtttattgga |
46814798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 313 - 526
Target Start/End: Original strand, 46814282 - 46814495
Alignment:
| Q |
313 |
gctgtttccaccaacacaacgagttttaacaaaagagtaagtagtaaatttctcagaaattacccattttgcgttgggggaattaccaccgatgtgaaga |
412 |
Q |
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| T |
46814282 |
gctgtttccaccaacacaacgagttttaacaaaagagtaagtagtaaatttctcagaaattacccattttgcgttgggggaattaccaccgatgtgaaga |
46814381 |
T |
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| Q |
413 |
tatagcttaacggcgttagggttttgatttttaacagcgtatttgagcttaagagctttgagtttggcttcaacttcatctaccgatgacggagttttca |
512 |
Q |
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| T |
46814382 |
taaagcttaacggcgttagggttttgatttttaacagcgtatttgagcttaagagctttgagtttggcttcaacttcatctaccgatgacggagttttca |
46814481 |
T |
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| Q |
513 |
ctcgtttctctgaa |
526 |
Q |
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| T |
46814482 |
ctcgtttctctgaa |
46814495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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