View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_low_24 (Length: 338)
Name: NF2711_low_24
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_24 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 25793625 - 25793324
Alignment:
| Q |
19 |
cagcagaaagattcatacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactcc |
118 |
Q |
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| T |
25793625 |
cagcagaaagattcatacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactcc |
25793526 |
T |
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| Q |
119 |
ctccgtatcatgattttgaaggactgcaagttactaaattttcggccgtttcaagaaactctataatannnnnnngttcctagtggtcagattatgtatg |
218 |
Q |
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| T |
25793525 |
ctccatctcatgatttggaaggactgcaagttactaaattttcggccatttcaagaaactctttaatatttttttgttcctagtggtcagattatgtatg |
25793426 |
T |
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| Q |
219 |
aaaaatgataaatttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25793425 |
aaaaatgataaatttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttca |
25793326 |
T |
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| Q |
319 |
ac |
320 |
Q |
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|| |
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| T |
25793325 |
ac |
25793324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 10136539 - 10136455
Alignment:
| Q |
232 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgctt |
316 |
Q |
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| T |
10136539 |
ttaccaattgcttcaaccaggcgtagaaccatctttccggtgtgaactcctttgacacagcttgaccaatagactttgtatgctt |
10136455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 10213001 - 10212917
Alignment:
| Q |
232 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgctt |
316 |
Q |
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| T |
10213001 |
ttaccaattgcttcgaccagaggcagaaccatctttccggagtgaactcctttgacacagcttgaccaatagactttgtatgctt |
10212917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 232 - 315
Target Start/End: Complemental strand, 10133918 - 10133835
Alignment:
| Q |
232 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgct |
315 |
Q |
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| T |
10133918 |
ttaccaattgcttcgaccagacgcaaaaccatatttccggtgtgaactcctttgacacagcttgaccaatagactttgtatgct |
10133835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 10365757 - 10365840
Alignment:
| Q |
231 |
tttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgc |
314 |
Q |
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| T |
10365757 |
tttaccaactgcttcaaccaggcgtagaaccatctttccggtgtgaactcctttgacacaacttgaccaataaactttgtatgc |
10365840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 10102078 - 10101994
Alignment:
| Q |
232 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgctt |
316 |
Q |
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| T |
10102078 |
ttaccaattgcgtcgacctgaggcagaaccatctttccggagtgaactcctttgacacagcttgaccaatagactttgtatgctt |
10101994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 10378208 - 10378286
Alignment:
| Q |
235 |
ccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatg |
313 |
Q |
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| T |
10378208 |
ccaattgcttcaaccaagtgtagaaccatctttccggcgtgaactcctttgacaccacttgaccaatagactttgtatg |
10378286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 10075098 - 10075062
Alignment:
| Q |
254 |
gcagaaccatctttccagtgtgaactcctttgacaca |
290 |
Q |
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| T |
10075098 |
gcagaaccatatttccagtgtgaactcctttgacaca |
10075062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 84952 - 84896
Alignment:
| Q |
232 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgaca |
288 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
84952 |
ttaccaattgcttcaaccagcctcagaaccatctttccagtgtgaactcctttgaca |
84896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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