View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_low_25 (Length: 327)
Name: NF2711_low_25
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 5040908 - 5040604
Alignment:
| Q |
9 |
agcacagatgaaggaaatgatgtatagagcagcagcatttagaccagtgaattttggaatggatgatattgatgtaattgnnnnnnngcctaagaggaag |
108 |
Q |
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| T |
5040908 |
agcacaaatgaaggaaatgatgtatagagcagcagcatttagaccagtgaattttggaatggatgatattgatgtaattgaaaaaaagccgaagaggaag |
5040809 |
T |
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| Q |
109 |
aatgtaaagatatcaaatgatccacaaactgttgctgcaagacatagaagggaaagaataggtgaaagaattagggttttgcaaaagattgtacctggtg |
208 |
Q |
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| T |
5040808 |
aatgtaaagatatcaaatgatcctcaaactgttgctgcaaggcatagaagagaaagaataagtgaaagaattagggttttgcaaaagattgtacctggtg |
5040709 |
T |
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| Q |
209 |
gaagcaaaatggacactgcttcaatgcttgatgaagctgcaaattatctcaagtttttaaggtcacaggttaaggcacttgaaaatttaggtaacaaagt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040708 |
gaagcaaaatggacactgcttcaatgcttgatgaagctgcaaattatctcaagtttttaaggtcacaggttaaggcacttgaaaatttaggtaacaaagt |
5040609 |
T |
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| Q |
309 |
taatg |
313 |
Q |
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||||| |
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| T |
5040608 |
taatg |
5040604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 43187144 - 43186976
Alignment:
| Q |
96 |
gcctaagaggaagaatgtaaagatatcaaatgatccacaaactgttgctgcaagacatagaagggaaagaataggtgaaagaattagggttttgcaaaag |
195 |
Q |
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| T |
43187144 |
gcctaaaaggaagaatgttaagatatcaaaggatccacaaactgtggcggctaggcaaagaagggaaagaataagtgaaaggattagagtcttgcagaag |
43187045 |
T |
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| Q |
196 |
attgtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagctgcaaattatctcaagttt |
264 |
Q |
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| T |
43187044 |
attgttcctggtggaaccaagatggacactgcatcaatgcttgatgaagctgctaattacctcaagttt |
43186976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 43187222 - 43187181
Alignment:
| Q |
9 |
agcacagatgaaggaaatgatgtatagagcagcagcatttag |
50 |
Q |
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| T |
43187222 |
agcacaaatgaaggaaatgatatatagagctgcagcatttag |
43187181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 6259553 - 6259698
Alignment:
| Q |
100 |
aagaggaagaatgtaaagatatcaaatgatccacaaactgttgctgcaagacatagaagggaaagaataggtgaaagaattagggttttgcaaaagatt- |
198 |
Q |
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||||| |||||||| ||||| ||||| |||||||||| ||| || |||||||||||||| |||||||| |||||||||| ||| | || | ||||||| |
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| T |
6259553 |
aagagaaagaatgtgaagatttcaaaggatccacaaagtgtagcagcaagacatagaagagaaagaattagtgaaagaataaggatattac-aaagatta |
6259651 |
T |
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| Q |
199 |
gtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagc |
245 |
Q |
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||||||||||||| ||||||||||||||||| ||| | |||||||| |
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| T |
6259652 |
gtacctggtggaacaaaaatggacactgcttctatgttagatgaagc |
6259698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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