View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2711_low_27 (Length: 309)
Name: NF2711_low_27
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 87 - 302
Target Start/End: Original strand, 3889581 - 3889795
Alignment:
| Q |
87 |
gggctcaactgtgtggacatgggcttggttaggcccaatttgatagcatcataagaaaaagagagacaaaaaccctaatttctatcatctttgagtt-ga |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3889581 |
gggctcaactgtgtggacatgggcttggttaggcccaatttgataacatcataagaaa--gagagacaaaaaccctaatttctatcatctttgagtttga |
3889678 |
T |
|
| Q |
186 |
gctcactcgccgtatcgcgaacgaagaagctgagatccaaatcaacatttcacaatgaaggttttcctctcaatccctaatttcgtttgttcctttgatt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3889679 |
gctcactcgccgtatcgcgaacgaagaagctgagatccaaatcaacatttcacaatgaaggttttcctctcaatccctaatttcgtttgttcctttgatt |
3889778 |
T |
|
| Q |
286 |
tcattgcctttgctact |
302 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
3889779 |
tcattgcttttgatact |
3889795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3889495 - 3889528
Alignment:
| Q |
1 |
tatttatttggtacaaactatgtattttagtcac |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3889495 |
tatttatttggtacaaactatgtattttagtcac |
3889528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University