View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2711_low_3 (Length: 777)

Name: NF2711_low_3
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2711_low_3
NF2711_low_3
[»] chr4 (10 HSPs)
chr4 (169-761)||(11797512-11798093)
chr4 (187-448)||(11701770-11702031)
chr4 (193-445)||(11675880-11676132)
chr4 (193-445)||(11684159-11684411)
chr4 (192-437)||(11695984-11696229)
chr4 (173-417)||(11778983-11779227)
chr4 (15-172)||(11786155-11786314)
chr4 (15-172)||(11798322-11798481)
chr4 (612-670)||(24613676-24613734)
chr4 (623-670)||(30982853-30982900)
[»] scaffold0294 (1 HSPs)
scaffold0294 (173-448)||(16415-16690)
[»] chr6 (8 HSPs)
chr6 (612-670)||(16766723-16766781)
chr6 (612-671)||(4118307-4118366)
chr6 (612-655)||(9522917-9522960)
chr6 (612-670)||(17302583-17302641)
chr6 (612-670)||(25038046-25038104)
chr6 (610-655)||(785445-785490)
chr6 (623-664)||(9107351-9107392)
chr6 (612-661)||(21395292-21395341)
[»] scaffold0008 (1 HSPs)
scaffold0008 (612-687)||(263330-263405)
[»] chr7 (6 HSPs)
chr7 (612-687)||(6028651-6028726)
chr7 (612-661)||(9408318-9408367)
chr7 (612-668)||(24339668-24339724)
chr7 (612-666)||(7438732-7438786)
chr7 (612-670)||(26033436-26033494)
chr7 (612-666)||(43243103-43243157)
[»] chr1 (4 HSPs)
chr1 (612-687)||(32461422-32461496)
chr1 (612-650)||(26526751-26526789)
chr1 (612-666)||(31694689-31694743)
chr1 (612-666)||(47989523-47989577)
[»] chr8 (2 HSPs)
chr8 (612-670)||(2572031-2572089)
chr8 (612-670)||(22652002-22652060)
[»] chr5 (5 HSPs)
chr5 (612-670)||(21542056-21542114)
chr5 (612-686)||(12641700-12641774)
chr5 (612-670)||(18592099-18592157)
chr5 (612-670)||(21522776-21522834)
chr5 (612-670)||(21533342-21533400)
[»] chr3 (4 HSPs)
chr3 (614-670)||(17005594-17005650)
chr3 (612-687)||(55212989-55213063)
chr3 (612-670)||(14209139-14209197)
chr3 (612-661)||(1509565-1509614)
[»] scaffold0086 (1 HSPs)
scaffold0086 (612-671)||(2954-3013)
[»] chr2 (4 HSPs)
chr2 (614-661)||(4882680-4882727)
chr2 (612-671)||(30717504-30717563)
chr2 (612-670)||(28524452-28524510)
chr2 (620-670)||(34337156-34337206)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 169 - 761
Target Start/End: Complemental strand, 11798093 - 11797512
Alignment:
Q  169 ctaaaaaagtgaagaattgaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcaccta 268  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| |    
T  11798093 ctaaaaaagtgaagaattgaactaaccataatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaa 11797994  T
Q  269 acaggggaaggagagcagcagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaatt 368  Q
    | || ||||| |||| |||||||||| |||||| ||| ||||| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  11797993 agagaggaagtagagaagcagttccaacccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaatt 11797894  T
Q  369 cccctgaatcccataaaatgatatcctctctgccacttccacacctaaacaaaacattcataattcatttcaattctcattgcatttagaaacacaataa 468  Q
    ||| ||||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11797893 cccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataattcatttcaattctcattgcatttagaaacacaataa 11797794  T
Q  469 acnnnnnnnnnnntgttaatcgaaacgaaaagaattgattatgagtttgatccatctgtctatgaagcatggacacaaacatggacacatgacacgacat 568  Q
    |            ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||            |||||||||||||||||||||    
T  11797793 ataaataaaaaaatgttaatcgaaacgacaagaactaattatgagtttgatccatctgtctatgaag------------catggacacatgacacgacat 11797706  T
Q  569 tgacacgggcacatcaacaccaataaaattttg-nnnnnnnntgacataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacg 667  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||    
T  11797705 tgacacgggcacatcaacaccaataaaattttgaaaaaaaaatgacataatttaatgtaatcacaagtgtcggtgttgtgtcgttgtcagacataacacg 11797606  T
Q  668 tgttggatactgagacacgctttcgatcagaagtgtcagtgcaacaaagttctatgttattaaagtagtccgttaaaactgaactacgttaatg 761  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||    
T  11797605 tgttggatactgggacacgctttcgatcagaagtgtcagtgcaacaaagttctatgttgttaaagtaatccgttaaaattgaactacgttaatg 11797512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 187 - 448
Target Start/End: Complemental strand, 11702031 - 11701770
Alignment:
Q  187 gaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcag 286  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||       |||||||| || ||||| |||| ||    
T  11702031 gaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaag 11701932  T
Q  287 cagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaa 386  Q
    | ||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||| |    
T  11701931 ctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataata 11701832  T
Q  387 tgatatcctctctgccacttccacacctaaacaaaacattcataattcatttcaattctcat 448  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||    
T  11701831 tgataccctctctgccacttccacacctaaacataacattcataatccatttaaattctcat 11701770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 193 - 445
Target Start/End: Complemental strand, 11676132 - 11675880
Alignment:
Q  193 accaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttc 292  Q
    ||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||       ||||| || || |||||||||| ||||  ||    
T  11676132 accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc 11676033  T
Q  293 cagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatat 392  Q
    ||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||     
T  11676032 cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgatac 11675933  T
Q  393 cctctctgccacttccacacctaaacaaaacattcataattcatttcaattct 445  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  11675932 cctctctgccacttccacacctatacaaaacattcataactcatttcaattct 11675880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 193 - 445
Target Start/End: Complemental strand, 11684411 - 11684159
Alignment:
Q  193 accaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttc 292  Q
    ||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||       ||||| || || |||||||||| ||||  ||    
T  11684411 accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc 11684312  T
Q  293 cagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatat 392  Q
    ||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||     
T  11684311 cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgatac 11684212  T
Q  393 cctctctgccacttccacacctaaacaaaacattcataattcatttcaattct 445  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  11684211 cctctctgccacttccacacctatacaaaacattcataactcatttcaattct 11684159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 192 - 437
Target Start/End: Complemental strand, 11696229 - 11695984
Alignment:
Q  192 aaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagtt 291  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||| || || ||||| |||| |||||||    
T  11696229 aaccaatatatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagtt 11696130  T
Q  292 ccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgata 391  Q
    |||||||||||||| ||||| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||     
T  11696129 ccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatg 11696030  T
Q  392 tcctctctgccacttccacacctaaacaaaacattcataattcatt 437  Q
     ||||||||||| ||||||||||||| | |||||||| ||||||||    
T  11696029 ccctctctgccatttccacacctaaatataacattcacaattcatt 11695984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 173 - 417
Target Start/End: Complemental strand, 11779227 - 11778983
Alignment:
Q  173 aaaagtgaagaattgaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacag 272  Q
    ||||||||||||  |||| |||||| | |||||| ||||||||||||||||||||| | |||||||||||||||||||||||       ||||| || ||    
T  11779227 aaaagtgaagaacagaaccaaccaatacatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagag 11779128  T
Q  273 gggaaggagagcagcagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccc 372  Q
     |||||||||| ||||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| || |||    
T  11779127 aggaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaagtttccc 11779028  T
Q  373 tgaatcccataaaatgatatcctctctgccacttccacacctaaa 417  Q
    | || |||| || |||| |||||||||||||| ||||||||||||    
T  11779027 ttaaccccaaaatatgacatcctctctgccacctccacacctaaa 11778983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 11786314 - 11786155
Alignment:
Q  15 ctaagaaaattgctcttctcgcaacaaatatt---cactcccaactaaaaagacaaaagtacccttgcataacttaagtctttcatcatgaataactttt 111  Q
    ||||||||||||||||||| ||||||||||||   ||||||||||| ||||||||||| ||||||||| |||||||| ||||||    ||| ||||||||    
T  11786314 ctaagaaaattgctcttcttgcaacaaatatttctcactcccaactgaaaagacaaaaatacccttgcgtaacttaaatctttcggtctgagtaactttt 11786215  T
Q  112 ataataataaagtgataatgctacaatactttttgttaaggagataattctacaatactaa 172  Q
    ||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11786214 atagttatagagtgataatgctacaatac-ttttgttaaggagataattctacaatactaa 11786155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 11798481 - 11798322
Alignment:
Q  15 ctaagaaaattgctcttctcgcaacaaatatt---cactcccaactaaaaagacaaaagtacccttgcataacttaagtctttcatcatgaataactttt 111  Q
    ||||||||||||||||||| ||||||||||||   ||||||||||| ||||||||||| ||||||||| |||||||| ||||||    ||| ||||||||    
T  11798481 ctaagaaaattgctcttcttgcaacaaatatttctcactcccaactgaaaagacaaaaatacccttgcgtaacttaaatctttcggtctgagtaactttt 11798382  T
Q  112 ataataataaagtgataatgctacaatactttttgttaaggagataattctacaatactaa 172  Q
    ||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11798381 atagttatagagtgataatgctacaatac-ttttgttaaggagataattctacaatactaa 11798322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 670
Target Start/End: Complemental strand, 24613734 - 24613676
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| ||||||| ||||||||||| |||  |||||||||||||||| ||||||||    
T  24613734 acataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacgacacgtgt 24613676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 670
Target Start/End: Complemental strand, 30982900 - 30982853
Alignment:
Q  623 tgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  30982900 tgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgt 30982853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 167; Significance: 5e-89; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 173 - 448
Target Start/End: Complemental strand, 16690 - 16415
Alignment:
Q  173 aaaagtgaagaattgaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacag 272  Q
    ||||||||||||  |||| |||||| |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||       |||||||| ||    
T  16690 aaaagtgaagaacagaaccaaccaatatatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagag 16591  T
Q  273 gggaaggagagcagcagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccc 372  Q
     ||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||    
T  16590 aggaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttccc 16491  T
Q  373 tgaatcccataaaatgatatcctctctgccacttccacacctaaacaaaacattcataattcatttcaattctcat 448  Q
    | |||||||  | |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||    
T  16490 ttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcat 16415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 16766723 - 16766781
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  16766723 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgt 16766781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 671
Target Start/End: Complemental strand, 4118366 - 4118307
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgtt 671  Q
    |||||||| ||||||||||||||||| | | ||||||| ||||| ||||||| |||||||    
T  4118366 acataattaaatgtaattacaagtgttggttttgtgtcagtgtcggacacaatacgtgtt 4118307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 655
Target Start/End: Original strand, 9522917 - 9522960
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtc 655  Q
    |||||||| | ||||||||||||||||| |||||||||||||||    
T  9522917 acataattcagtgtaattacaagtgtcggtgttgtgtcggtgtc 9522960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 17302583 - 17302641
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| ||||||||||||||||||  ||| ||||| || | |||||||||||||||    
T  17302583 acataattcaatgtaattacaagtgtcattgtcgtgtcagtattagacacaacacgtgt 17302641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 670
Target Start/End: Complemental strand, 25038104 - 25038046
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||||| ||||||||||| ||||| | |||||| |||||| ||||| ||||||||    
T  25038104 acataatttagtgtaattacaaatgtcggtattgtgttggtgtccgacacgacacgtgt 25038046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 655
Target Start/End: Complemental strand, 785490 - 785445
Alignment:
Q  610 tgacataatttaatgtaattacaagtgtcgctgttgtgtcggtgtc 655  Q
    |||||||||| |||||||| |||||||||| ||| |||||||||||    
T  785490 tgacataattcaatgtaatcacaagtgtcggtgtcgtgtcggtgtc 785445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 664
Target Start/End: Complemental strand, 9107392 - 9107351
Alignment:
Q  623 tgtaattacaagtgtcgctgttgtgtcggtgtcagacacaac 664  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||    
T  9107392 tgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaac 9107351  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 661
Target Start/End: Complemental strand, 21395341 - 21395292
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 661  Q
    |||||||||| ||||||||||||||||| ||| ||||| ||||| |||||    
T  21395341 acataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtcggacac 21395292  T

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Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 612 - 687
Target Start/End: Complemental strand, 263405 - 263330
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 687  Q
    |||||||| | |||||||| |||||||  ||| ||||||||||||||||| ||||||||| |||||  ||||||||    
T  263405 acataattcagtgtaattataagtgtcagtgtcgtgtcggtgtcagacacgacacgtgttcgataccaagacacgc 263330  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 612 - 687
Target Start/End: Original strand, 6028651 - 6028726
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 687  Q
    |||||||||||||||||||||| ||||| ||| ||||| |||||  |||| ||||| ||| || ||||||||||||    
T  6028651 acataatttaatgtaattacaaatgtcggtgtcgtgtcagtgtcgaacacgacacgagttcgacactgagacacgc 6028726  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 661
Target Start/End: Complemental strand, 9408367 - 9408318
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 661  Q
    |||||||||| ||||||||||||||||| ||| || ||||||||||||||    
T  9408367 acataatttagtgtaattacaagtgtcggtgtcgtatcggtgtcagacac 9408318  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 612 - 668
Target Start/End: Original strand, 24339668 - 24339724
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgt 668  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||||||    
T  24339668 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgt 24339724  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 666
Target Start/End: Original strand, 7438732 - 7438786
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 666  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||| |||| ||||    
T  7438732 acataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaacacgacac 7438786  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 670
Target Start/End: Complemental strand, 26033494 - 26033436
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| | ||||||||||||||||| | | ||||||||||||||||  ||||||||    
T  26033494 acataattcagtgtaattacaagtgtcggtctcgtgtcggtgtcagacatgacacgtgt 26033436  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 666
Target Start/End: Original strand, 43243103 - 43243157
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 666  Q
    |||||||||||||||||||||||||||| ||| ||||  |||||  |||||||||    
T  43243103 acataatttaatgtaattacaagtgtcgatgtcgtgtttgtgtcgaacacaacac 43243157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 612 - 687
Target Start/End: Complemental strand, 32461496 - 32461422
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 687  Q
    |||||||||||||||||||||||||| | || |||||||||||| ||||| ||||||||  || |||| |||||||    
T  32461496 acataatttaatgtaattacaagtgttggtg-tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgc 32461422  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 650
Target Start/End: Complemental strand, 26526789 - 26526751
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcg 650  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  26526789 acataatttaatataattacaagtgtcggtgttgtgtcg 26526751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 666
Target Start/End: Complemental strand, 31694743 - 31694689
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 666  Q
    |||||||| | | ||||||||||||||| ||| ||||||||||| ||||||||||    
T  31694743 acataattcagtataattacaagtgtcggtgtcgtgtcggtgtcggacacaacac 31694689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 666
Target Start/End: Original strand, 47989523 - 47989577
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 666  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||||    
T  47989523 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacac 47989577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 670
Target Start/End: Complemental strand, 2572089 - 2572031
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||||| ||||||||||||||||| ||| ||||| ||||| ||||| ||||||||    
T  2572089 acataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacgacacgtgt 2572031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 22652002 - 22652060
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| ||| ||||||||||||||| ||| ||||||||||| ||||| ||| ||||    
T  22652002 acataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacacgacatgtgt 22652060  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 21542056 - 21542114
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgt 21542114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 686
Target Start/End: Original strand, 12641700 - 12641774
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacg 686  Q
    |||||||||| | ||||| || |||||  ||| |||| |||||||||||||||||||||| || || ||||||||    
T  12641700 acataatttagtataattgcacgtgtcagtgtcgtgttggtgtcagacacaacacgtgttcgacacggagacacg 12641774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 18592099 - 18592157
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| |||||||||| | ||| || ||| ||||||||||| ||||||||||||||    
T  18592099 acataattcaatgtaattatatgtgccggtgtcgtgtcggtgtcggacacaacacgtgt 18592157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 21522776 - 21522834
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| | ||||||||||| ||||| ||| ||||||||||| ||||| ||||||||    
T  21522776 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgt 21522834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 21533342 - 21533400
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| | ||||||||||| ||||| ||| ||||||||||| ||||| ||||||||    
T  21533342 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgt 21533400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 670
Target Start/End: Complemental strand, 17005650 - 17005594
Alignment:
Q  614 ataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||| | |||||||| |||||||| |||||||| ||||||||||| |||||||||    
T  17005650 ataattcagtgtaattataagtgtcggtgttgtgttggtgtcagacataacacgtgt 17005594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 687
Target Start/End: Original strand, 55212989 - 55213063
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 687  Q
    |||||||||| || |||||||||||||| || |||||||||||| | ||||||||||||  || || |||||||||    
T  55212989 acataatttagtgcaattacaagtgtcggtg-tgtgtcggtgtcgggcacaacacgtgtccgacaccgagacacgc 55213063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 14209139 - 14209197
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| | ||||||||||||||||  ||| ||||||||||| ||||| ||||||||    
T  14209139 acataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacacgtgt 14209197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 661
Target Start/End: Original strand, 1509565 - 1509614
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 661  Q
    |||||||||| ||||||||||||||||| ||| || |||||||| |||||    
T  1509565 acataatttagtgtaattacaagtgtcggtgtcgtttcggtgtccgacac 1509614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 671
Target Start/End: Original strand, 2954 - 3013
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgtt 671  Q
    |||||||||| ||||||||||||| ||  ||| |||||||| |||||||| |||||||||    
T  2954 acataatttagtgtaattacaagtatcagtgtcgtgtcggtatcagacacgacacgtgtt 3013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 661
Target Start/End: Complemental strand, 4882727 - 4882680
Alignment:
Q  614 ataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 661  Q
    |||||| | ||||||||||||||||| ||| |||||||||||||||||    
T  4882727 ataattcagtgtaattacaagtgtcgatgtcgtgtcggtgtcagacac 4882680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 671
Target Start/End: Complemental strand, 30717563 - 30717504
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgtt 671  Q
    |||||||| | ||||||||||||||||| ||| |||||| |||| ||||| |||||||||    
T  30717563 acataattcagtgtaattacaagtgtcgatgtcgtgtcgttgtcggacacgacacgtgtt 30717504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 28524452 - 28524510
Alignment:
Q  612 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||||||| | |||||||| | |||||| |||||||| |||||| ||||||||||||||    
T  28524452 acataattcagtgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgt 28524510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 620 - 670
Target Start/End: Complemental strand, 34337206 - 34337156
Alignment:
Q  620 taatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 670  Q
    |||| ||||||||||||||| |||  |||||||||| ||||||||||||||    
T  34337206 taatttaattacaagtgtcggtgtcctgtcggtgtcggacacaacacgtgt 34337156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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