View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2711_low_30 (Length: 296)
Name: NF2711_low_30
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_30 |
 | |
|
| [»] scaffold2156 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 31)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 17728246 - 17728525
Alignment:
| Q |
1 |
catctacataattaggtttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
17728246 |
catctacataattaggtttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaattttgttgagttaacca |
17728345 |
T |
|
| Q |
101 |
cattgatatccgaccagagctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgcta |
200 |
Q |
| |
|
| |||||||||| |||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17728346 |
cgatgatatccgaacagagctagcattgatgccttgtttgaaagttaacagtgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgcta |
17728445 |
T |
|
| Q |
201 |
gaaatgcttttttggaatgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcatgag |
280 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17728446 |
gaaatgcttttttagaatgtggttatagataagattagaagcaaaagaagtgacatttgtgtagtaaaaatggtcatgag |
17728525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 19029475 - 19029754
Alignment:
| Q |
1 |
catctacataattaggtttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
19029475 |
catctacataattaggtttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaattttgttgagttaacca |
19029574 |
T |
|
| Q |
101 |
cattgatatccgaccagagctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgcta |
200 |
Q |
| |
|
| |||||||||| |||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19029575 |
cgatgatatccgaacagagctagcattgatgccttgtttgaaagttaacagtgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgcta |
19029674 |
T |
|
| Q |
201 |
gaaatgcttttttggaatgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcatgag |
280 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19029675 |
gaaatgcttttttagaatgtggttatagataagattagaagcaaaagaagtgacatttgtgtagtaaaaatggtcatgag |
19029754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 19436313 - 19436062
Alignment:
| Q |
23 |
atcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccagagcta |
122 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||| ||||| |||||||||||||| | ||| |
|
|
| T |
19436313 |
atcaagttttgtaactcttccggtaatgttgtcacagtggacacctctccaagcacaacaatctttttcggttgaccacgttgatatccgaccaaaacta |
19436214 |
T |
|
| Q |
123 |
gcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatgtgg |
222 |
Q |
| |
|
||||||| || |||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |||||| | ||| |||| |||||||| | |
|
|
| T |
19436213 |
tcattgatgccttgtttgaaggttaacagtgtctcttgatctttctcattgcatcgaaccactgtgtg---attgctgcacatggttttgtggaatgttg |
19436117 |
T |
|
| Q |
223 |
ttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
19436116 |
ttatagataaaagtagaagcaaaaagagtgacatttgtgaagtaagaatggtcat |
19436062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 16676625 - 16676380
Alignment:
| Q |
17 |
tttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgacca |
116 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| || ||||| |||||||| ||||||| |||| | |||| |||| |||||||||||| | |
|
|
| T |
16676625 |
tttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgacta |
16676526 |
T |
|
| Q |
117 |
gagctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttgga |
216 |
Q |
| |
|
| ||| ||||||| || |||||||||||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
16676525 |
aaactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaaccaatctgtgatcattgctagatatgcttttgtgga |
16676426 |
T |
|
| Q |
217 |
atgtggttatagataaaattagaaacaaaagaagtgacatttgtgt |
262 |
Q |
| |
|
||||||||| | |||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
16676425 |
atgtggttacaaataaaagtagaagcaaaataagtgacatttgtgt |
16676380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 18102869 - 18102624
Alignment:
| Q |
29 |
ttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccagagctagcattg |
128 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||| ||||||||||||||| |||||| | ||| ||||| |||| ||||||||| | ||| ||||| |
|
|
| T |
18102869 |
ttctgttactctcccggtaatgttgtcacagtggactccttcccaagcacaaaaatcttttttggttgaccacgttgaaatccgaccaaaactatcattg |
18102770 |
T |
|
| Q |
129 |
attccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatgtggttatag |
228 |
Q |
| |
|
|| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||| | | |||||||| ||||||||||||| | |
|
|
| T |
18102769 |
atgccatgtttgaaggttaacagtgtctcatgatctttctcattgcatcgaaccactgtgtg---attggtgcacatgcttttgtggaatgtggttaccg |
18102673 |
T |
|
| Q |
229 |
ataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
|||||| ||||| |||||||||| |||||||| |||||||| ||||| |
|
|
| T |
18102672 |
ataaaagtagaagtaaaagaagtggcatttgtgaggtaaaaattgtcat |
18102624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 19460949 - 19460693
Alignment:
| Q |
18 |
ttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgacca- |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |||| || ||||||||||| |
|
|
| T |
19460949 |
ttgagatcaagttttgtaactcttccagtaatgttgtcacagtggactccttcccaagcacaacaatctatttcggttgaccatgttaatatccgaccaa |
19460850 |
T |
|
| Q |
117 |
gagctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttgga |
216 |
Q |
| |
|
||| | |||||||||| | |||||||||||| | |||||| |||||||||||||||||| ||||| |||||||| |||| | | |||||| | || |
|
|
| T |
19460849 |
gag-tgtcattgattccttatttgaaggttaagagtgtctctcgatctttctcattgcatccaaccactgtgtgat---tgctgcacaagcttttgtaga |
19460754 |
T |
|
| Q |
217 |
atgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
19460753 |
atgtggttatagataaaagtaaaagcaaaagaagtgaaatttgtgtagtaagaatggtcat |
19460693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 19333418 - 19333158
Alignment:
| Q |
14 |
aggtttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| | |||||||||| | |||| ||||| ||||||||||| |
|
|
| T |
19333418 |
aggtttgagatcaagttctgtaactcttccggtaatgttgtcgcagcggactccttcccatacgcaacaatctttttcagttgaccacgttgatatccga |
19333319 |
T |
|
| Q |
114 |
ccagagctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgctttttt |
213 |
Q |
| |
|
||| ||| ||| ||| || ||| |||| |||||||||||||| |||||||||||||||| ||||| | |||||| ||||||| | ||| |||| | |
|
|
| T |
19333318 |
ccaagactatcatggatgccctgtctgaacgttaacaatgtctctcgatctttctcattgcagcgaacaactgtgtg---attgctacacatggttttgt |
19333222 |
T |
|
| Q |
214 |
ggaatgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
||||||| ||||||||||||| | || |||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
19333221 |
ggaatgtagttatagataaaagtgtaagcaaaagaagtgaaatttgtgtagtaagaatggtcat |
19333158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 19375112 - 19374853
Alignment:
| Q |
17 |
tttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgacca |
116 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||||||||||| ||| |||||||||| ||||||||||| | | | ||||| ||| ||| |||| |
|
|
| T |
19375112 |
tttgagatcaatttctgtaactctactagtaatgttgtcacagtagactccttcccaagaacaacaatctttttcaatcgaccacgatgaaatcatacca |
19375013 |
T |
|
| Q |
117 |
gagctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttgga |
216 |
Q |
| |
|
| ||| |||||||||| | |||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||| | | |||| |||| |
|
|
| T |
19375012 |
aaactatcattgattccctctttgaaggttaatagtgtctctcgatctttctcattgcatcgaaccaatgtgtgat---tgctgcacaccgttttgtgga |
19374916 |
T |
|
| Q |
217 |
atgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcatga |
279 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19374915 |
atgtggttatagataaaagtataagcaaaagaagtgaaatttgtgtagtaaaaatggtcatga |
19374853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 19413633 - 19413360
Alignment:
| Q |
1 |
catctacataattaggtttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaacca |
100 |
Q |
| |
|
||||| || |||||||||||||||||| || |||||||||||| ||||||||||| |||||||| ||||||||| |||||||||||| | ||| |||| |
|
|
| T |
19413633 |
catcttcaaaattaggtttgagatcaatttttgtaactcttccggtaatgttgtcgcagtggactccttcccaaccacaacaatctttttcggttgacca |
19413534 |
T |
|
| Q |
101 |
cattgatatccgaccagagctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgcta |
200 |
Q |
| |
|
| ||||||||| |||| ||| || |||| || || ||||||||||||| |||||| |||| ||||||||||||||||| | |||| ||| |||| |
|
|
| T |
19413533 |
cgttgatatccaaccaagactatcagtgataccctggttgaaggttaacagtgtctctcgatcattctcattgcatcgaacaactgtgggattgttgc-- |
19413436 |
T |
|
| Q |
201 |
gaaatgcttttttggaatgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
| ||| |||| |||||| ||||||| ||||||| ||||| |||||||||||||||||||| || || ||||||||| |
|
|
| T |
19413435 |
-acatggttttgtggaatatggttattgataaaagtagaagcaaaagaagtgacatttgtgaaggaagaatggtcat |
19413360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 18115381 - 18115126
Alignment:
| Q |
19 |
tgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgacc-ag |
117 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| | ||| ||||| || |||||||||| || |
|
|
| T |
18115381 |
tgagatcaagttttgtaactcttccggtaatgttctcacagtggactccttcccaagcacaacaatctatttcggttgaccacgttaatatccgaccaag |
18115282 |
T |
|
| Q |
118 |
agctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaa |
217 |
Q |
| |
|
|| | |||||||||| | |||||||||||| | |||||| |||||||||||||||||| ||||| |||||| |||||| | |||||| | ||| |
|
|
| T |
18115281 |
ag-tgtcattgattccttttttgaaggttaagagtgtctctcgatctttctcattgcatccaaccactgtgtg---attgctgcacgagcttttgtagaa |
18115186 |
T |
|
| Q |
218 |
tgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
||||||||||||||||| || || |||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
18115185 |
tgtggttatagataaaagtaaaagcaaaagaagtgaaatttgtgtagtaagaatggtcat |
18115126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 19350846 - 19350595
Alignment:
| Q |
19 |
tgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccaga |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| |||||||| || ||||| |||||| ||||| | | || |||| ||||||||| |||| | |
|
|
| T |
19350846 |
tgagatcaagttttgtaactcttccagtaatattgtcgcagtggactccgtcccatacacaactatctttttcaattgaccatgttgatatccaaccaaa |
19350747 |
T |
|
| Q |
119 |
gctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaat |
218 |
Q |
| |
|
|| ||||||| |||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | | ||| |||| |||||| |
|
|
| T |
19350746 |
attatcattgatgccatgtttaaaggttaacaatgtctctctatctttctcattgcattgaaccaatgtgtg---attggtgcacatggttttgtggaat |
19350650 |
T |
|
| Q |
219 |
gtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatgg |
273 |
Q |
| |
|
|||||||||||||||| || || |||||||||||| ||||||||||||| ||||| |
|
|
| T |
19350649 |
gtggttatagataaaagtataagcaaaagaagtgagatttgtgtagtaagaatgg |
19350595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 19380319 - 19380063
Alignment:
| Q |
18 |
ttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccag |
117 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | | |||| ||||| |||| ||| |||| |
|
|
| T |
19380319 |
ttgagatcaatttttgtaactcttctggtaatgttgtcacagtggacacctttccaagcacaacaatcattttcagttgaccacgttgaaatcgtaccaa |
19380220 |
T |
|
| Q |
118 |
agctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaa |
217 |
Q |
| |
|
||| |||||||||| ||||| |||||||| | | |||| |||||||||||||| |||||||||| |||||| |||||| | |||| ||| ||||| |
|
|
| T |
19380219 |
gactatcattgattccctgtttaaaggttaagagtatctctagatctttctcattacatcgaaccactgtgtg---attgctgcatatgcatttgtggaa |
19380123 |
T |
|
| Q |
218 |
tgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
|||||||||||| | || ||||| |||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
19380122 |
tgtggttatagaaagaaatagaagtaaaataagtgacatttgtgtagtaagaattgtcat |
19380063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 18015515 - 18015340
Alignment:
| Q |
17 |
tttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgacca |
116 |
Q |
| |
|
||||||||||| |||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| | || ||||| |||| ||| |||| |
|
|
| T |
18015515 |
tttgagatcaatttctataactctaccagtaatgttgtcacagtggactccttcccaagaacaacaatctttttctgtcgaccacgttgaaatcatacca |
18015416 |
T |
|
| Q |
117 |
gagctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgat |
192 |
Q |
| |
|
| ||| |||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18015415 |
aaactatcattgattccttgtttgaaggttaacagtgtctctcgatctttctcattgcatcgaaccaatgtgtgat |
18015340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 277
Target Start/End: Complemental strand, 19354253 - 19354025
Alignment:
| Q |
42 |
ccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccagagctagcattgattccatgtttga |
141 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| ||||||||||| | ||| |||||||||| ||| |||| ||| |||||||||| ||||| | |
|
|
| T |
19354253 |
ccagtaatattgtcacagtggacttcttcccaagaacaacaatctttttcagtcgaccacattgaaatcataccaagactatcattgattccctgtttaa |
19354154 |
T |
|
| Q |
142 |
aggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatgtggttatagataaaattagaaa |
241 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||| |||| | ||| |||||||||||||||||||||| |||||| |
|
|
| T |
19354153 |
aggttaacaatgtctctcgatctttctcattgcatcgaaccatagtgtgattgttgc-------acatttgtggaatgtggttatagataaaaatagaaa |
19354061 |
T |
|
| Q |
242 |
caaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
19354060 |
caaaagaagtgaaatttgtgtagtaagaattgtcat |
19354025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 25462486 - 25462235
Alignment:
| Q |
20 |
gagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccagag |
119 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||| | || |||||||||| ||| |||| |
|
|
| T |
25462486 |
gagatcaagttttgtaactcgtccggtaatgttgtcacagacgacaccttcccatgcacaacaatctttttcag---accacattgaaatcataccaaga |
25462390 |
T |
|
| Q |
120 |
ctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatg |
219 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||| ||||||| |||| | |||||||| ||||| | |
|
|
| T |
25462389 |
ctgtcattgatgccatgtttgaaggttaacagtgtctcacggtctttctcattgcatcgaaccacagtgtgattgttgc---acatgcttttgtggaacg |
25462293 |
T |
|
| Q |
220 |
tggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
||||||| || |||| ||||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
25462292 |
tggttattgaaaaaagtagaagtaaaattagtgacatttgtgtagtaagaatggtcat |
25462235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 44 - 277
Target Start/End: Complemental strand, 19399135 - 19398905
Alignment:
| Q |
44 |
agtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccagagctagcattgattccatgtttgaag |
143 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||| |||||||||| | ||| ||||| |||||||||||||| ||| ||||||| || ||||||||| |
|
|
| T |
19399135 |
agtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaag |
19399036 |
T |
|
| Q |
144 |
gttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatgtggttatagataaaattagaaaca |
243 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| | |||||| |||| || | ||| |||| |||||| | ||||||||||||| || || || |
|
|
| T |
19399035 |
tttaacagtgtctctcgatctttctcattgcatcgaacaactgtgtg---attggtacacatggttttgtggaatatagttatagataaaagtataagca |
19398939 |
T |
|
| Q |
244 |
aaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| |
|
|
| T |
19398938 |
aaagaagtgaaatttgtgtagtaagaatggtcat |
19398905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 14896954 - 14897205
Alignment:
| Q |
20 |
gagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccagag |
119 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||||| |||||||| |||||||||||||||||||||| | | |||| ||||||||||||||| | |
|
|
| T |
14896954 |
gagatcaagttttgtaactctttcagtagtgttgtcgcagtggactccttcccaagcacaacaatctttttcgg---accatattgatatccgaccaaaa |
14897050 |
T |
|
| Q |
120 |
ctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatg |
219 |
Q |
| |
|
|| ||| ||| || ||||||||| |||||||| ||||| ||||||||||||||||| |||||| ||||| ||||| | ||| |||| ||||||| |
|
|
| T |
14897051 |
gtatcatggatgccttgtttgaagtttaacaatatctcacgatctttctcattgcattgaaccacggtgtg---gttgctgcacatggttttgtggaatg |
14897147 |
T |
|
| Q |
220 |
tggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
| ||||||||||||| | |||||||| ||||| |||||||| ||||| ||||||||| |
|
|
| T |
14897148 |
tagttatagataaaagcataaacaaaaaaagtgtcatttgtgaagtaagaatggtcat |
14897205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 18164596 - 18164418
Alignment:
| Q |
1 |
catctacataattaggtttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaacca |
100 |
Q |
| |
|
||||| || |||||||||||||||||| || |||||||||||| ||||||||||| |||||||| |||||||| |||||||||||| | ||| |||| |
|
|
| T |
18164596 |
catcttcaaaattaggtttgagatcaatttttgtaactcttccggtaatgttgtcgcagtggactccttcccatacacaacaatctttttcggttgacca |
18164497 |
T |
|
| Q |
101 |
cattgatatccgaccagagctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcga |
179 |
Q |
| |
|
| |||||||||||||| | ||| ||||||| || ||| |||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
18164496 |
cgttgatatccgaccaaaactatcattgatgccgtgtctgaacgttaacaatgtctctcgatctttttcattgcatcga |
18164418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 17941182 - 17940926
Alignment:
| Q |
18 |
ttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccag |
117 |
Q |
| |
|
|||||||||| || ||||||||| ||||| |||||||| |||| |||||||||||||||||||| | | ||| ||||| ||||||| |||||| |
|
|
| T |
17941182 |
ttgagatcaacttttgtaactctgtttgtaatattgtcacaaaggactccttcccaagcacaacaatcatttttggttgaccacgttgatattcgaccaa |
17941083 |
T |
|
| Q |
118 |
agctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaa |
217 |
Q |
| |
|
||| ||||||| ||||||||||||||||| | |||||| ||||||||||||||||| |||| | |||||| |||||| | ||| |||| ||||| |
|
|
| T |
17941082 |
gactatcattgatgccatgtttgaaggttaatagtgtctcgcgatctttctcattgcattgaacaactgtgtg---attgctgcacatggttttgtggaa |
17940986 |
T |
|
| Q |
218 |
tgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
|||||||||| |||||| ||||| ||||| ||| |||||||||| ||||| ||||||||| |
|
|
| T |
17940985 |
tgtggttataaataaaagtagaagcaaaaaaagggacatttgtgaagtaagaatggtcat |
17940926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 19392575 - 19392401
Alignment:
| Q |
18 |
ttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccag |
117 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
19392575 |
ttgagatcaagttttgtaactcttcaggtagtgttgtcacaatggacaccttcccaagcacaacaatctttttttgttgtccacattgatatccgaccaa |
19392476 |
T |
|
| Q |
118 |
agctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgat |
192 |
Q |
| |
|
|| |||||| || |||||||||||||||| |||||| ||||||||||||| ||| |||||| ||||||| |
|
|
| T |
19392475 |
gattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccacggtgtgat |
19392401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 18107865 - 18107610
Alignment:
| Q |
19 |
tgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccaga |
118 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| | ||| ||||| |||| | | | | |
|
|
| T |
18107865 |
tgagatcaatttctgtaactcttccgataatgttgtcacagtggacttcttcccatacacaacaatctttttcggttgaccaccttgaaaacatgctaag |
18107766 |
T |
|
| Q |
119 |
gctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaat |
218 |
Q |
| |
|
||| |||||| ||||||||||||||||| | | | || ||||||||||||||||||||||||| |||||| |||||| | |||| ||| |||||| |
|
|
| T |
18107765 |
actattattgatgccatgtttgaaggttaagagtatatctagatctttctcattgcatcgaaccactgtgtg---attgctgcacatgcatttgtggaat |
18107669 |
T |
|
| Q |
219 |
gtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
||||||||||| | || ||||| |||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
18107668 |
gtggttatagaaagaaatagaagtaaaataagtgacatttgtgtagtaagaattgtcat |
18107610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 18146268 - 18146062
Alignment:
| Q |
18 |
ttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccag |
117 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||| |||| |||| |||| |||||||||||| | |||| ||||| |||| ||||||||| |
|
|
| T |
18146268 |
ttgagatcaagttttgtaactctgtttgtaatattgtcacaaaggactcctttccaaacacaacaatctttttcagttgaccacgttgaaatccgaccaa |
18146169 |
T |
|
| Q |
118 |
agctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaa |
217 |
Q |
| |
|
| ||| ||||||| || | |||||||||| ||| ||||||| ||||||||||||||||||||| | |||||| |||||| | |||||||| ||||| |
|
|
| T |
18146168 |
aactatcattgatgccctttttgaaggttgacagtgtctcatgatctttctcattgcatcgaaaaattgtgtg---attgctgcacatgcttttgtggaa |
18146072 |
T |
|
| Q |
218 |
tgtggttata |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
18146071 |
tgtggttata |
18146062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 19419398 - 19419153
Alignment:
| Q |
29 |
ttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccagagctagcattg |
128 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| | | | ||||| |||| | | | | | ||| |||| |
|
|
| T |
19419398 |
ttctgtaactcttccggtaatgttgtcacagtggactccttcccatacacaacaatctttttctgctgaccaccttgaaaacaggctaagactattattg |
19419299 |
T |
|
| Q |
129 |
attccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatgtggttatag |
228 |
Q |
| |
|
|| || |||||||||||||| | | |||| ||||||||||||||||||||||||| |||||||| ||| | |||| | | ||||||||||||||| |
|
|
| T |
19419298 |
atgccctgtttgaaggttaagagtatctctagatctttctcattgcatcgaaccattgtgtgatatctgc---acatgcatatgcggaatgtggttatag |
19419202 |
T |
|
| Q |
229 |
ataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
| |||| ||||| |||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
19419201 |
aaaaaaatagaagtaaaataagtgacatttgtgtagtaagaattgtcat |
19419153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 277
Target Start/End: Original strand, 24493994 - 24494236
Alignment:
| Q |
32 |
tgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccagagctagcattgatt |
131 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| |||| ||| ||||||||||||| ||| |||| |||| ||| ||||| ||| ||| ||| |
|
|
| T |
24493994 |
tgtaactctgccagtaatgttgtcacattggactcctttccatgcacaacaatcttttacggttgaccatgttgaaatcagaccaagactatcatcgatg |
24494093 |
T |
|
| Q |
132 |
ccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatgtggttatagata |
231 |
Q |
| |
|
| |||||||||| ||||| |||||| ||||||||||||||||| |||||||||||| || ||| | ||||| || |||||||||||||| |||| |
|
|
| T |
24494094 |
ctttgtttgaaggctaacagtgtctctcgatctttctcattgcatgaaaccaatgtgtg---atggctgcacatgctcttgtggaatgtggttatggata |
24494190 |
T |
|
| Q |
232 |
aaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
||| ||||| ||||||||||| || ||| | ||||| ||||||||| |
|
|
| T |
24494191 |
aaagtagaagcaaaagaagtggcaattgcgaagtaagaatggtcat |
24494236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 277
Target Start/End: Complemental strand, 18143712 - 18143465
Alignment:
| Q |
24 |
tcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccagagctag |
123 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |||| ||| |||||||| | ||||||| || | |||| |||| ||||||| ||||| ||| |
|
|
| T |
18143712 |
tcaagttttgtaactcttctgctaatgttgtcgcagtagactccttcccatacgcaacaatttttttcagttgaccatgttgatatttgaccaagactat |
18143613 |
T |
|
| Q |
124 |
cattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatgtggt |
223 |
Q |
| |
|
||||||| || ||||||| ||||||||||||| ||||||||| ||||||||||| |||||||| |||| | ||| |||| ||||||||||| |
|
|
| T |
18143612 |
cattgatgccccatttgaagcttaacaatgtctctcaatctttctcgttgcatcgaac---tgtgtgat---tgctgcacatggttttgtggaatgtggt |
18143519 |
T |
|
| Q |
224 |
tatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
||| |||| || || || |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
18143518 |
tattgatagaagtataagcaaaagaagtgacatttgtgaagtaagaatggtcat |
18143465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 18015340 - 18015243
Alignment:
| Q |
165 |
ttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatgtggttatagataaaattagaaacaaaagaagtgacatttgtgtag |
264 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | ||| || | |||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
18015340 |
ttctcattgcatcgaaccaatgtgtgat---tgctgcacatggttatgtggaatgtggttatagataaaaggagaaggaaaagaagtgacatttgtgtag |
18015244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 19423912 - 19423776
Alignment:
| Q |
130 |
ttccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatgtggttataga |
229 |
Q |
| |
|
|||||| ||||||| ||||||||||||| ||||||||| |||||| | || || |||| | ||||||||| ||| || | |||||||||||||| || |
|
|
| T |
19423912 |
ttccatttttgaagattaacaatgtctcttgatctttcttattgcaaccaagcaccctgtggttattgctagacatggttatgtggaatgtggttattga |
19423813 |
T |
|
| Q |
230 |
taaaattagaaacaaaagaagtgacatttgtgtagta |
266 |
Q |
| |
|
||||| || || |||||||||||| |||||| ||||| |
|
|
| T |
19423812 |
taaaagtataagcaaaagaagtgaaatttgtatagta |
19423776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 277
Target Start/End: Complemental strand, 18022221 - 18022039
Alignment:
| Q |
92 |
agttaaccacattgatatccgaccagagctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtga |
191 |
Q |
| |
|
|||| ||||| |||||||||||| | ||| ||||||||||| |||| ||| |||| | |||||| ||||||| ||||||||| | |||| ||||| | |
|
|
| T |
18022221 |
agttgaccactttgatatccgactaagactatcattgattccacgtttaaagtttaagagtgtctctcgatctttttcattgcattgcaccactgtgtaa |
18022122 |
T |
|
| Q |
192 |
tcattgctagaaatgcttttttggaatgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
| |||| | ||| |||| |||||||||||||| ||||||| ||||| |||||||||||| |||| || ||||| |||| |||| |
|
|
| T |
18022121 |
t---tgctgcacatggttttgtggaatgtggttattgataaaagtagaagcaaaagaagtgaaatttttgaagtaagaatgatcat |
18022039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 16653252 - 16653321
Alignment:
| Q |
208 |
ttttttggaatgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
||||| ||||||||||||| ||||||| || || ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
16653252 |
tttttaggaatgtggttattgataaaagtataagcaaaataagtgacatttgtgtagtaagaatggtcat |
16653321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 19012147 - 19012216
Alignment:
| Q |
208 |
ttttttggaatgtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
||||| ||||||||||||| ||||||| || || ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
19012147 |
tttttaggaatgtggttattgataaaagtataagcaaaataagtgacatttgtgtagtaagaatggtcat |
19012216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 19424025 - 19423958
Alignment:
| Q |
20 |
gagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatctt |
87 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||| | |||||||| ||||||| ||||||||||||| |
|
|
| T |
19424025 |
gagatcaagttctattactcttccaataatgttattgcagtggactccttcccttgcacaacaatctt |
19423958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 15531800 - 15531545
Alignment:
| Q |
19 |
tgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccaga |
118 |
Q |
| |
|
|||| ||||||| |||||||||||| || ||||||||||| ||||| ||| ||||||||||||||| || | | | |||||||||| ||||||||| | |
|
|
| T |
15531800 |
tgaggtcaagttttgtaactcttccggtcatgttgtcacaatggactcctccccaagcacaacaatttttttcaatagaccacattgaaatccgaccaaa |
15531701 |
T |
|
| Q |
119 |
gctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaat |
218 |
Q |
| |
|
||| |||||| || |||||||||||||||| |||||| ||||||||||||| ||| |||| |||||| | |||| | | |||||||| |||||| |
|
|
| T |
15531700 |
actatcattgacaccctgtttgaaggttaacagtgtctctcgatctttctcattacattgaacaaatgtg---ttattggtgcacatgcttttgtggaat |
15531604 |
T |
|
| Q |
219 |
gtggttatagataaaattagaaacaaaagaagtgacatttgtgtagtaaaaatggtcat |
277 |
Q |
| |
|
||||| ||| |||||| || || ||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
15531603 |
gtggtaatacataaaagtaaaaccaatagaagtgacatttgtgaagtaagaatggtcat |
15531545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 13667466 - 13667637
Alignment:
| Q |
21 |
agatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgacca-gag |
119 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||| || | ||| ||||| |||||||||||||| ||| |
|
|
| T |
13667466 |
agattaagttttgtaactcttccggtaatgttgtcacagtggactccttcccaagcacaacaacttttttcggttgaccacgttgatatccgaccaagag |
13667565 |
T |
|
| Q |
120 |
ctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgat |
192 |
Q |
| |
|
| |||||| ||| |||||||||||||| | |||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
13667566 |
-tgtcattgactccctgtttgaaggttaagagtgtctctcgatctttctcattgcattgaaccaatgtgtgat |
13667637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 281
Target Start/End: Original strand, 528 - 752
Alignment:
| Q |
54 |
tcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccagagctagcattgattccatgtttgaaggttaacaatg |
153 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||||| | ||| ||||| ||||||||| |||| ||| ||||||| | ||||||||||||||||||| |
|
|
| T |
528 |
tcacagtagactccttcccatgcacaacaatctttttcggttgaccacgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatg |
627 |
T |
|
| Q |
154 |
tctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatgtggttatagataaaattagaaacaaaagaagtga |
253 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||| |||| | || || |||| || |||||||||| | |||||| ||||| ||||||| ||| |
|
|
| T |
628 |
tctcacgatctttctcattgcatctaaccacagtgtg---attggtgcaagtgattttgtgaaatgtggttacatataaaagtagaagaaaaagaaatga |
724 |
T |
|
| Q |
254 |
catttgtgtagtaaaaatggtcatgagt |
281 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
725 |
tatttgtgtagtaagaatggtcatgagt |
752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 281
Target Start/End: Complemental strand, 4802 - 4578
Alignment:
| Q |
54 |
tcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccagagctagcattgattccatgtttgaaggttaacaatg |
153 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||||| | ||| ||||| ||||||||| |||| ||| ||||||| | ||||||||||||||||||| |
|
|
| T |
4802 |
tcacagtagactccttcccatgcacaacaatctttttcggttgaccacgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatg |
4703 |
T |
|
| Q |
154 |
tctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaatgtggttatagataaaattagaaacaaaagaagtga |
253 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||| |||| | || || |||| || |||||||||| | |||||| ||||| ||||||| ||| |
|
|
| T |
4702 |
tctcacgatctttctcattgcatctaaccacagtgtg---attggtgcaagtgattttgtgaaatgtggttacatataaaagtagaagtaaaagaaatga |
4606 |
T |
|
| Q |
254 |
catttgtgtagtaaaaatggtcatgagt |
281 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
4605 |
tatttgtgtagtaagaatggtcatgagt |
4578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 8458923 - 8458683
Alignment:
| Q |
18 |
ttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatcttgatgagttaaccacattgatatccgaccag |
117 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| ||||||||||||| |||| ||| ||||||||||||| | |||| ||||| ||||||| |||| |
|
|
| T |
8458923 |
ttgagatcaagttttgtaactctgccagtaatgctgtcacagtggactcctttccacgcacaacaatctttttcagttgaccacgttgatattataccac |
8458824 |
T |
|
| Q |
118 |
agctagcattgattccatgtttgaaggttaacaatgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttggaa |
217 |
Q |
| |
|
||| |||||| || |||||||||||||||| ||| | | || |||||||||||| || ||||||||| ||||| | |||||||| ||||| |
|
|
| T |
8458823 |
gactatcattgaggccctgtttgaaggttaacattgtttgtcggtcattctcattgcatgaaaacaatgtgtg---gttgctgcacatgcttttgtggaa |
8458727 |
T |
|
| Q |
218 |
tgtggttatagataaaattagaaacaaaagaagtgacatttgtg |
261 |
Q |
| |
|
|||||||| |||||| | ||||| |||||||| ||||||||||| |
|
|
| T |
8458726 |
tgtggttacagataacagtagaagcaaaagaattgacatttgtg |
8458683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 16436996 - 16437064
Alignment:
| Q |
18 |
ttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaatct |
86 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||||||||| ||||||||||| | |||||||||| |
|
|
| T |
16436996 |
ttgagatccaattctgtaactcttccagtagcgttgtcacaagttacaccttcccaggtacaacaatct |
16437064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University