View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2711_low_31 (Length: 291)
Name: NF2711_low_31
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_31 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 47072760 - 47073050
Alignment:
| Q |
1 |
gattggtgtcaataaaacaaaagacacaatagtgataagaattgaaagactattacacaagttaactagagaagcaactagtacttactttgtatttctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47072760 |
gattggtgtcaataaaacaaaagacacaatagttataagaattgaaagactattacacaagttaactagagaagcaactagtacttactttgtatttctc |
47072859 |
T |
|
| Q |
101 |
tcatgggtacaaactgcactatatctcgtgtagctattcgaccggtagaactttctaagcgacatccattatcagcatccagtacctgtaataattaacc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47072860 |
tcatggggacaaactgcactatatctcgtgtagctattcgaccggtagaactttctaagcgacatccattatcagcatccagtacctgtaataattaacc |
47072959 |
T |
|
| Q |
201 |
ttagtacttgttattctctcagataaaaaagcatacttagcaggagccatgttaaggaaaagaaacttaggcaaggatataagtagacctc |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47072960 |
ttagtacttgttattctctcagataaaaaagcatacttagcaggagccatgttaaggaaaagaaacttaggcaaggatataagtaaacctc |
47073050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 47054826 - 47054945
Alignment:
| Q |
79 |
tagtacttactttgtatttctctcatgggtacaaactgcactatatctcgtgtagctattcgaccggtagaactttctaagcgacatccattatcagcat |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| || ||||||||||||| ||||| ||||| ||||||||| ||||||| ||||||||||| || |
|
|
| T |
47054826 |
tagtacttactttgtacttctctcatggggacaaattgtactatatctcgtgcagctacacgaccaatagaactttttaagcgaggtccattatcagtat |
47054925 |
T |
|
| Q |
179 |
ccagtacctgtaataattaa |
198 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
47054926 |
ccagtacctgaaataattaa |
47054945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 6 - 291
Target Start/End: Complemental strand, 18232351 - 18232067
Alignment:
| Q |
6 |
gtgtcaataaaacaaaagacacaatagtgataagaattgaaagactattacacaagttaa-ctagagaagcaactagtacttactttgtatttctctcat |
104 |
Q |
| |
|
|||||||||||||||| ||| ||| ||| ||||||||||||| |||| || |||||| || |||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
18232351 |
gtgtcaataaaacaaa-gactcaaaagttataagaattgaaaaactacta-acaagtcaaactagagaagcgactagtacttactttgtacttctctcat |
18232254 |
T |
|
| Q |
105 |
gggtacaaactgcactatatctcgtgtagctattcgaccggtagaactttctaagcgacatccattatcagcatccagtacctgtaataattaaccttag |
204 |
Q |
| |
|
||| ||||| |||||||||||||||||||||| ||||| |||||||||| || |||| ||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
18232253 |
ggggacaaattgcactatatctcgtgtagctagacgaccagtagaacttttcaatcgacgaccattatcagcatccagtacctgtaatgataaaccttag |
18232154 |
T |
|
| Q |
205 |
tacttgttattctctcagataaaaaagcatacttagcaggagccatgttaaggaaaagaaacttaggcaaggatataagtagacctc |
291 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||| | |||| | || |||||||||||||| |||| || |||| ||| ||||||| |
|
|
| T |
18232153 |
tacatgttattctctcagataacaaagcatacttcgtgggagtcgtgctaaggaaaagaaacatagggaacgataaaagcagacctc |
18232067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University