View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_low_33 (Length: 269)
Name: NF2711_low_33
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 54473077 - 54473315
Alignment:
| Q |
14 |
agacaacatgattttcttttttgaaccagttacacagcttcactctcacctgtgtaagataatttgcttgcataagaggattttgcatctcttgtacgat |
113 |
Q |
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| T |
54473077 |
agacaacatgattttcttttttgaaccagttacacagcttcactctcacctgtgtaagataatttgcttgcataagaggattttgcatctcttgtacgat |
54473176 |
T |
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| Q |
114 |
gatgatttgcttaatgctgtatggacgccacattatcatgattcatatcagtataaaaaagtttttagggataataaatgtcctgcaattttgttacttt |
213 |
Q |
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| T |
54473177 |
gatgatttgcttaatgctgtatggacgccacattatcatgattcatatcagtataaaaaagtttttagggataataaatgtcctgcaattttgttacttt |
54473276 |
T |
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| Q |
214 |
gagtttgagtacgagagtcaaatcatttgattcttgaat |
252 |
Q |
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| T |
54473277 |
gagtttgagtacgagagtctagtcatttgattcttgaat |
54473315 |
T |
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