View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_low_36 (Length: 248)
Name: NF2711_low_36
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 30733005 - 30732777
Alignment:
| Q |
1 |
atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgcctttgctaacacttatgagcaa |
100 |
Q |
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| T |
30733005 |
atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgcccttgctaacacttatgagcaa |
30732906 |
T |
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| Q |
101 |
cccttttgacttgtctcctaataaactcatctctaatttttacaacggataagattatctctacggtctaggataatatcacttagatccgacacccctg |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
30732905 |
cccttttgacttgtctcctaataaactcatctttaatttttacaacggataagattatctctacggtctcggataataccacttagatccgacaccccta |
30732806 |
T |
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| Q |
201 |
gacttttactgtggaatttatcaaccacg |
229 |
Q |
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| T |
30732805 |
gacttttactgtggaatttatcaaccacg |
30732777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 14668194 - 14668422
Alignment:
| Q |
1 |
atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgcctttgctaacacttatgagcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14668194 |
atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgcccttgctaacacttatgagcaa |
14668293 |
T |
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| Q |
101 |
cccttttgacttgtctcctaataaactcatctctaatttttacaacggataagattatctctacggtctaggataatatcacttagatccgacacccctg |
200 |
Q |
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| T |
14668294 |
cccttttgacttgtatcctaataaactcatctttaatttttacaacggacaagaatatctctacggtctcggataatatcacttagatccgacaccccta |
14668393 |
T |
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| Q |
201 |
gacttttactgtggaatttatcaaccacg |
229 |
Q |
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| T |
14668394 |
gacttttactgtggaatttatcaaccacg |
14668422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 14707617 - 14707432
Alignment:
| Q |
2 |
tgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgcctttgctaacacttatgagcaac |
101 |
Q |
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| T |
14707617 |
tgataaaaagcttatagcatttcattaattagaatatgatgaatacaagtaggatcgatggaaatgtggaaggccgcccttgctaacacttatgagcaac |
14707518 |
T |
|
| Q |
102 |
ccttttgacttgtctcctaataaactc-atctctaatttttacaacggataagattatctctacggtctaggataatatcacttaga |
187 |
Q |
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| T |
14707517 |
ccttttgacttgtctcctaataaactcaatct-taatttttacaacggacaagattatctctacggtctcggataatatcacttaga |
14707432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 14702869 - 14702779
Alignment:
| Q |
136 |
atttttacaacggataagattatctctacggtctaggataatatcacttagatccgacacccctggacttttactgtggaatttatcaacc |
226 |
Q |
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|||||||||||||| ||||||| || | |||| ||||||||||||| |||||||||||||| |||| |||||||||| |||||||||| |
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| T |
14702869 |
atttttacaacggactagattatatcatcagtcttggataatatcactatgatccgacacccctagactcttactgtggagtttatcaacc |
14702779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 14665240 - 14665330
Alignment:
| Q |
138 |
ttttacaacggataagattatctctacggtctaggataatatcacttagatccgacacccctggacttttactgtggaatttatcaaccacg |
229 |
Q |
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|||||||||||| |||||||| ||| ||| || || ||| |||||| |||||||||||| || |||| ||||||||||||| |||||||||| |
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| T |
14665240 |
ttttacaacggacaagattatatcttcgggctcgg-taacatcactaagatccgacacctctagactcttactgtggaattgatcaaccacg |
14665330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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