View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_low_42 (Length: 236)
Name: NF2711_low_42
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 18100774 - 18100553
Alignment:
| Q |
1 |
caatgtatctggtactcataaagctactcctactgctgctgttcgtgacttggagaagaattgtcgtaactcttcttatgctggttgcaccaattgtctt |
100 |
Q |
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| T |
18100774 |
caatgtatctggttctcataaagctacccctactgctgctgttcgtgacttggagaagaattgtcgtaactcttcttatgctggttgcaccaattgtctt |
18100675 |
T |
|
| Q |
101 |
agtgcattacaaaaggtaaattaatgaattacacatta--tataaaccaatatttttaaaaacagttgaacatggacagattagtttgttcgttggttta |
198 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
18100674 |
agtgcattacaaaaggtaaattaattaattacacattatatataaaccaatattttaaaaaacggttgaacatggacagattagttcgttcgttggttta |
18100575 |
T |
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| Q |
199 |
atttcgattacattgcagtttg |
220 |
Q |
| |
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||||| |||||||||||||||| |
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| T |
18100574 |
atttcaattacattgcagtttg |
18100553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 37858382 - 37858161
Alignment:
| Q |
1 |
caatgtatctggtactcataaagctactcctactgctgctgttcgtgacttggagaagaattgtcgtaactcttcttatgctggttgcaccaattgtctt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858382 |
caatgtatctggttctcataaagctacccctactgctgctgttcgtgacttggagaagaattgtcgtaactcttcttatgctggttgcaccaattgtctt |
37858283 |
T |
|
| Q |
101 |
agtgcattacaaaaggtaaattaatgaattacacatta--tataaaccaatatttttaaaaacagttgaacatggacagattagtttgttcgttggttta |
198 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
37858282 |
agtgcattacaaaaggtaaattaattaattacacattatatataaaccaatattttaaaaaacggttgaacatggacagattagttcgttcgttggttta |
37858183 |
T |
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| Q |
199 |
atttcgattacattgcagtttg |
220 |
Q |
| |
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||||| |||||||||||||||| |
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| T |
37858182 |
atttcaattacattgcagtttg |
37858161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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