View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_low_46 (Length: 223)
Name: NF2711_low_46
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 8191626 - 8191817
Alignment:
| Q |
19 |
tttagtgtatttgaatgacgacgaaaaatttcatctttgataaacttcaacaatgttgtcttgctaatgcctaatgctttagctaacccccttttgagtg |
118 |
Q |
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| T |
8191626 |
tttagtgtatttgaatgacgacgaaaaatttcatctttgataaacttcaacaatgttgtcttgctaatgcctaatgctgtagctaacccccttttgagtg |
8191725 |
T |
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| Q |
119 |
ctatgcttagctaacgaaatattgtgccctttctcaatatctatctctactcttttccgaccacaattttttgttcttttatgagaataatc |
210 |
Q |
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| T |
8191726 |
ctatgcttagctaacgaaatattgtgccctttctcaatatctatctctactcttttccgaccacaattttttgttcttttatgagaagaatc |
8191817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 8186594 - 8186515
Alignment:
| Q |
28 |
tttgaatgacgacgaaaaatttcatctttgataaacttcaacaatgttgtcttgctaatgcctaatgctttagctaaccc |
107 |
Q |
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| T |
8186594 |
tttgaataacgacgcataattccatctttgattaacttcaacaatgtcgtcttgctaatgcccaatgctttagctaaccc |
8186515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 45488686 - 45488496
Alignment:
| Q |
19 |
tttagtgtatttgaatgacgacgaaaaatttcatctttgataaacttcaacaatgttgtcttgctaatgcctaatgctttagctaacccccttttgagtg |
118 |
Q |
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| T |
45488686 |
tttagtgtatttgaattacgatgcaaaattccatctttgataaacttcatcaatgccgtcttgctaatgcccaatgctttagctaacccccttt-gagtg |
45488588 |
T |
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| Q |
119 |
ctatgcttagctaacgaaatattgtgccctttctcaatatctatctctactcttttccgaccacaattttttgttcttttatgagaataatc |
210 |
Q |
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| T |
45488587 |
ctatgcttagctaatggaatgttgcgcactttctcaatatgtatctctactcttttccgaccacaattttttgttcttttatgggaagaatc |
45488496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 7303906 - 7303818
Alignment:
| Q |
114 |
gagtgctatgcttagctaacgaaatattgtgccctttctcaatatctatctctactcttttccgaccacaattttttgttcttttatga |
202 |
Q |
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| T |
7303906 |
gagtgctacgcttagctaacgaaacattgcgcattttgtcaaaatctatttggatcctttttcgaccacaattttttgttttcttatga |
7303818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 16444279 - 16444367
Alignment:
| Q |
114 |
gagtgctatgcttagctaacgaaatattgtgccctttctcaatatctatctctactcttttccgaccacaattttttgttcttttatga |
202 |
Q |
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| T |
16444279 |
gagtgctacgcttagctaacgaaacattgcgcattttgtcaaaatctatttggatcctttttcgaccacaattttttgttttcttatga |
16444367 |
T |
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