View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2711_low_6 (Length: 664)

Name: NF2711_low_6
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2711_low_6
NF2711_low_6
[»] chr8 (5 HSPs)
chr8 (96-418)||(43147245-43147567)
chr8 (559-653)||(43147010-43147104)
chr8 (18-67)||(43147585-43147634)
chr8 (108-164)||(26947030-26947086)
chr8 (22-67)||(3507917-3507962)
[»] chr3 (3 HSPs)
chr3 (247-418)||(39362723-39362893)
chr3 (593-651)||(39362573-39362631)
chr3 (112-164)||(12074251-12074303)
[»] chr4 (2 HSPs)
chr4 (108-164)||(4892216-4892272)
chr4 (108-162)||(4872396-4872450)
[»] chr1 (1 HSPs)
chr1 (108-164)||(32238586-32238642)
[»] scaffold0989 (1 HSPs)
scaffold0989 (108-164)||(1205-1261)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 96 - 418
Target Start/End: Complemental strand, 43147567 - 43147245
Alignment:
Q  96 cattctacatgtttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctagatcgtatcattacataatattttacacacttt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43147567 cattctacatgtttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctagatcgtatcattacataatattttacacacttt 43147468  T
Q  196 aagagagaattttacatacttctttgtcctgcatacatgtaatactatttaaatatggtgtatcattcaacttgattcatataggatattttgatgccgt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43147467 aagagagaattttacatacttctttgtcctgcatacatgtaatactatttaaatatggtgtatcattcaacttgattcgtataggatattttgatgccgt 43147368  T
Q  296 ttcatctattttgccaaccttgcctagtttgctttcttcaaaaattgtttgacacaacttctcttaaggagtagaaaatgtcggcaataagctgggccaa 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43147367 ttcatctattttgccaaccttgcctagtttgctttcttcaaaaattgtttgacacaacttctcttaaggagtagaaaatgtcggcaataagctgggccaa 43147268  T
Q  396 acactcccataatgcactcaact 418  Q
    |||||||||||||||||||||||    
T  43147267 acactcccataatgcactcaact 43147245  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 559 - 653
Target Start/End: Complemental strand, 43147104 - 43147010
Alignment:
Q  559 aacacaaaaatttggtaacacagttcagagtaaagttgacttctatgtaattttatacgtcttttctatatttgttttataataacttcattcat 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43147104 aacacaaaaatttggtaacacagttcagagtaaagttgacttctatataattttatacgtcttttctatatttgttttataataacttcattcat 43147010  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 43147634 - 43147585
Alignment:
Q  18 aatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43147634 aatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 43147585  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 26947030 - 26947086
Alignment:
Q  108 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 164  Q
    ||||||||| |||||||||||||||||||| |||||| || ||| ||||||||||||    
T  26947030 ttgatttactaatgacaagctctcccctttttataggctccaagggagagttctaga 26947086  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 3507962 - 3507917
Alignment:
Q  22 tatgatagaagtacaatttctattgcttgagagaatgctttgattc 67  Q
    ||||| ||||| ||||||||||||||||||||||||  ||||||||    
T  3507962 tatgagagaagaacaatttctattgcttgagagaataatttgattc 3507917  T

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Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 39362893 - 39362723
Alignment:
Q  247 aatatggtgtatcattcaacttgattcatataggatattttgatgccgtttcatctattttgccaaccttgcctagtttgctttcttcaaaaattgtttg 346  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||    
T  39362893 aatatggtgcatcattcaacttgattcatataggatattttgatgccgtttcatctattttgccaaccttgcctactgtgctttcttcaaaaattgtatg 39362794  T
Q  347 acacaacttctcttaaggagtagaaaatgtcggcaataagctgggccaaacactcccataatgcactcaact 418  Q
     |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  39362793 gcacaacttctcttaaggactagaaaa-gtcagcaataagctgggccaaacactcccataatgcactcaact 39362723  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 593 - 651
Target Start/End: Complemental strand, 39362631 - 39362573
Alignment:
Q  593 gttgacttctatgtaattttatacgtcttttctatatttgttttataataacttcattc 651  Q
    |||||||||||| || ||||| ||||||||||||||||||||| || ||||||||||||    
T  39362631 gttgacttctatttagttttacacgtcttttctatatttgtttcatgataacttcattc 39362573  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 12074303 - 12074251
Alignment:
Q  112 tttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 164  Q
    |||||||||||||||||||||| ||| |||||| |  ||||||||||||||||    
T  12074303 tttacaaatgacaagctctcccatttttataggcttcaagagagagttctaga 12074251  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 4892216 - 4892272
Alignment:
Q  108 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 164  Q
    |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  4892216 ttgatttacaaatgacaagctctcccctttttataggctctaagggagagttctaga 4892272  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 4872396 - 4872450
Alignment:
Q  108 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttcta 162  Q
    |||||||||||||||||||||||||||||| |||||| || ||| ||||||||||    
T  4872396 ttgatttacaaatgacaagctctcccctttttataggctccaagggagagttcta 4872450  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 32238642 - 32238586
Alignment:
Q  108 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 164  Q
    |||||||||||||||||||||||||||||| |||||| || ||| ||||||||||||    
T  32238642 ttgatttacaaatgacaagctctcccctttttataggctccaagggagagttctaga 32238586  T

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Target: scaffold0989 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 1205 - 1261
Alignment:
Q  108 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 164  Q
    ||||||||||||||||| ||||||||| || |||||| || ||| |||| |||||||    
T  1205 ttgatttacaaatgacacgctctccccgttttataggctccaagggagatttctaga 1261  T

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