View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_low_7 (Length: 629)
Name: NF2711_low_7
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 3337804 - 3338127
Alignment:
| Q |
19 |
tattttacaggtcgattttataactataataacatttgttttatatgcggtacttttcatgcgtgctaaattattcaatattctttgaatggcaaactag |
118 |
Q |
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| T |
3337804 |
tattttacaggtcgattttataactataataacatttgttttatatgcggtacttttcatgcgtgctaaattattcaatattctttgaatggcaaactag |
3337903 |
T |
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| Q |
119 |
ggctcaacaaacttgaagagaaattcaatatataatagggataacatgataaacaagttatttattaatcacaggtgcctaattgacttgttataattga |
218 |
Q |
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| T |
3337904 |
ggctcaacaaacttgaagagaaattcaatatataatagggataacatgataaacaagttatttattaatcacaggtgcctaattgacttgttataattga |
3338003 |
T |
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| Q |
219 |
gacgatgaagtgttgatatttgttggtgaggtttggtgcatataatggatggagaaagaaagagtacagagtgtagttaagttggcatggggttgaccgc |
318 |
Q |
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| T |
3338004 |
gacgatgaagtgttgatatttgttggtgaggtttggtgcatataatggatggagaaagaaagagtacagagtgtagttaagttggcatggggttgaccgc |
3338103 |
T |
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| Q |
319 |
ataatccagatcagtgttgctgtt |
342 |
Q |
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| T |
3338104 |
ataatccagatcagtgttgctgtt |
3338127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 389 - 628
Target Start/End: Original strand, 3338170 - 3338411
Alignment:
| Q |
389 |
tcacaaaaagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgataataatatgatattaat |
488 |
Q |
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| T |
3338170 |
tcacaaaaagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgataataatatgatattaat |
3338269 |
T |
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| Q |
489 |
cacaagtcattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgtcggc--nnnnnnnnnn |
586 |
Q |
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| T |
3338270 |
cacaagtcattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgtcggcctctctctctct |
3338369 |
T |
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| Q |
587 |
nntatgctccatccaatgcactcatggtggatcccacaaccc |
628 |
Q |
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| T |
3338370 |
cttatgctccatccaatgcactcatggtggaccccacaaccc |
3338411 |
T |
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