View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2714_high_1 (Length: 900)

Name: NF2714_high_1
Description: NF2714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2714_high_1
NF2714_high_1
[»] chr7 (9 HSPs)
chr7 (2-548)||(39526632-39527178)
chr7 (454-553)||(39525674-39525773)
chr7 (423-513)||(43938150-43938240)
chr7 (423-552)||(37563610-37563739)
chr7 (442-549)||(3226070-3226177)
chr7 (433-555)||(37563350-37563472)
chr7 (488-554)||(3228167-3228233)
chr7 (433-555)||(43937890-43938012)
chr7 (443-552)||(34454483-34454592)
[»] chr5 (10 HSPs)
chr5 (552-886)||(31026763-31027097)
chr5 (443-553)||(32052222-32052332)
chr5 (423-552)||(32052480-32052609)
chr5 (423-550)||(25253087-25253214)
chr5 (423-550)||(25316877-25317004)
chr5 (423-513)||(33735569-33735659)
chr5 (423-513)||(37945032-37945122)
chr5 (442-555)||(33735309-33735422)
chr5 (423-513)||(6421878-6421968)
chr5 (423-513)||(14745486-14745576)
[»] chr4 (15 HSPs)
chr4 (553-887)||(34104077-34104411)
chr4 (389-532)||(53752255-53752398)
chr4 (389-549)||(53753356-53753516)
chr4 (389-512)||(13231278-13231401)
chr4 (423-555)||(22249989-22250121)
chr4 (423-552)||(54961430-54961559)
chr4 (482-554)||(10128703-10128775)
chr4 (423-513)||(12691444-12691534)
chr4 (423-513)||(47980723-47980813)
chr4 (423-551)||(13872325-13872453)
chr4 (477-553)||(35602467-35602543)
chr4 (433-552)||(53559653-53559772)
chr4 (423-513)||(34238508-34238598)
chr4 (423-513)||(47862190-47862280)
chr4 (452-497)||(48532281-48532326)
[»] chr3 (11 HSPs)
chr3 (3-261)||(43698777-43699023)
chr3 (385-512)||(7463778-7463905)
chr3 (385-512)||(7481876-7482003)
chr3 (553-793)||(44812688-44812927)
chr3 (423-553)||(10749316-10749446)
chr3 (423-513)||(40256912-40257002)
chr3 (385-469)||(7482957-7483041)
chr3 (477-555)||(1741383-1741461)
chr3 (649-722)||(34633909-34633983)
chr3 (423-513)||(53037065-53037155)
chr3 (482-535)||(20961034-20961087)
[»] chr1 (13 HSPs)
chr1 (430-552)||(28533776-28533898)
chr1 (568-743)||(46011876-46012052)
chr1 (423-552)||(6056375-6056504)
chr1 (423-552)||(739218-739347)
chr1 (423-551)||(2953720-2953848)
chr1 (423-551)||(5183762-5183890)
chr1 (417-552)||(13873218-13873351)
chr1 (423-550)||(37152794-37152921)
chr1 (423-513)||(1040336-1040426)
chr1 (423-513)||(1047242-1047332)
chr1 (433-551)||(2953464-2953582)
chr1 (423-513)||(25415100-25415190)
chr1 (423-513)||(46849914-46850004)
[»] chr2 (13 HSPs)
chr2 (386-555)||(15075095-15075264)
chr2 (389-551)||(14243930-14244092)
chr2 (423-513)||(16367219-16367309)
chr2 (423-551)||(45663764-45663892)
chr2 (433-552)||(16366962-16367081)
chr2 (423-513)||(1149975-1150065)
chr2 (423-513)||(20911168-20911258)
chr2 (442-535)||(34404970-34405063)
chr2 (423-551)||(32519155-32519283)
chr2 (477-551)||(10446832-10446906)
chr2 (477-555)||(13646076-13646154)
chr2 (454-515)||(15074012-15074073)
chr2 (423-552)||(22731788-22731917)
[»] chr8 (13 HSPs)
chr8 (604-887)||(27365091-27365372)
chr8 (453-552)||(43073562-43073661)
chr8 (423-552)||(25287791-25287920)
chr8 (423-553)||(43866709-43866839)
chr8 (423-552)||(36623609-36623738)
chr8 (423-552)||(7649-7778)
chr8 (423-513)||(26739755-26739845)
chr8 (423-513)||(37343038-37343128)
chr8 (421-506)||(27856787-27856872)
chr8 (423-513)||(11478183-11478273)
chr8 (433-511)||(29190200-29190278)
chr8 (477-555)||(41773640-41773718)
chr8 (431-512)||(41251162-41251243)
[»] chr6 (11 HSPs)
chr6 (648-739)||(6323565-6323656)
chr6 (689-887)||(3060242-3060440)
chr6 (389-556)||(22539995-22540162)
chr6 (430-555)||(13480204-13480329)
chr6 (475-556)||(15523785-15523865)
chr6 (423-513)||(21880620-21880710)
chr6 (423-513)||(32337602-32337692)
chr6 (786-874)||(6323681-6323769)
chr6 (433-552)||(15819756-15819875)
chr6 (443-513)||(23292020-23292090)
chr6 (423-550)||(23291745-23291872)
[»] scaffold1493 (1 HSPs)
scaffold1493 (423-552)||(849-978)
[»] scaffold0206 (1 HSPs)
scaffold0206 (430-513)||(10363-10446)
[»] scaffold0015 (1 HSPs)
scaffold0015 (618-717)||(51320-51419)


Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 2 - 548
Target Start/End: Original strand, 39526632 - 39527178
Alignment:
Q  2 cggaatttgaatctgatgatgtcgattgtaaggttagcgggtaccttctccccaagcatgtgtttctcttgctttcaatttgttgggctatgtcatggga 101  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39526632 cggaatttgaatctgatgatgtcgattgcaaggttagcgggtatcttctccccaagcatgtgtttctcttgctttcaatttgttgggctatgtcatagga 39526731  T
Q  102 ttgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgactcatttggttttgtcggcgattacgttgtgtgttcatgataaagatgaaggt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39526732 ttgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgactcatttggttttgtcggcgattacgttgtgtgttcatgataaagatgaaggt 39526831  T
Q  202 gggtttgatgtctgggattgtgatgttttgagtttggaagttcagattcatgtggggaagaggaaagaaaggaaccaggggtattttggtcttttctcat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||     
T  39526832 gggtttgatgtctgggattgtgatgttttgagtttggaagttcagattcgtgtggggaagagtaaagaaaggaaccaggggtattttggtcttttctcac 39526931  T
Q  302 atgtctggattctctaagggcaaaatagtaattttgggtcggaattgctgagtcagaaaggccttgtcccagtcacgttgtgacacgtcatcgccatgtc 401  Q
    ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39526932 atgtctggattctctaagggcaaaatagtaattttggttatgaattgctgagtcagaaaggccttgtcccagtcatgttgtgacacgtcatcgccatgtc 39527031  T
Q  402 actaattatgtgacacataagtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtataggga 501  Q
    ||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |||||    
T  39527032 actaattatgtgacacataagtaatcagatgtaattagggtcaaaagtcaaatgattagtaattgcagggaagtttttgaaggattagtaagtacaggga 39527131  T
Q  502 cgaaaattcaaacggaccctatttacagggactaagcacatatttaa 548  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  39527132 cgaaaattcaaacggaccctatttacagggactaaacacatatttaa 39527178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 454 - 553
Target Start/End: Complemental strand, 39525773 - 39525674
Alignment:
Q  454 tgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagccta 553  Q
    ||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||||    
T  39525773 tgattagtaattgcagggaagttttgaaaggattagtaagtacaaggacgaaaattcaaacggatcctatttgcagggattaaacacatatttaagccta 39525674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 43938150 - 43938240
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||||||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  |||||||||||||||||    
T  43938150 taatcatatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaa 43938240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 423 - 552
Target Start/End: Original strand, 37563610 - 37563739
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| |||| |||| | ||||||||| || ||||| || ||||||||     |||||||||||||||| |  ||||||||||||||||| || |  ||    
T  37563610 taatcagatgtgattaggaccaaaagtcaaaagattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaatggcctata 37563709  T
Q  523 tttacagggactaagcacatatttaagcct 552  Q
    ||||||||||| ||  ||||||||||||||    
T  37563710 tttacagggacgaaagacatatttaagcct 37563739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 442 - 549
Target Start/End: Complemental strand, 3226177 - 3226070
Alignment:
Q  442 ccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcaca 541  Q
    |||||| || ||||||||||||||||| |    | || ||||||||||||||||||| ||| |||||||||| | ||||||||| || |||| |  ||||    
T  3226177 ccaaaactcaaatgattagtaattgcatgacaatatttgaaggattagtaagtatagagacaaaaattcaaatgaaccctatttgcacggaccacacaca 3226078  T
Q  542 tatttaag 549  Q
    ||||||||    
T  3226077 tatttaag 3226070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 555
Target Start/End: Complemental strand, 37563472 - 37563350
Alignment:
Q  433 taattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacaggga 532  Q
    |||||| | ||||||||| |||||||| || ||||||||     || ||||||||||||| |  ||||||||||||||||| || |  ||||| ||||||    
T  37563472 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattagaaggattagtaaattcagggacgaaaattcaaatggcctatatttgcaggga 37563373  T
Q  533 ctaagcacatatttaagcctaaa 555  Q
    | ||  |||||||||||||||||    
T  37563372 caaaagacatatttaagcctaaa 37563350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 554
Target Start/End: Original strand, 3228167 - 3228233
Alignment:
Q  488 agtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagcctaa 554  Q
    |||||||| | |||| |||||||||    |||||||||| ||||||||| |||||||||||||||||    
T  3228167 agtaagtacaaggacaaaaattcaagttaaccctatttatagggactaaacacatatttaagcctaa 3228233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 433 - 555
Target Start/End: Complemental strand, 43938012 - 43937890
Alignment:
Q  433 taattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacaggga 532  Q
    |||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  ||||| ||||||||||| |  |  |||||||| |||    
T  43938012 taattatgaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaatgacctatatttacaagga 43937913  T
Q  533 ctaagcacatatttaagcctaaa 555  Q
    | ||  |||||||||||||||||    
T  43937912 cgaaagacatatttaagcctaaa 43937890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 552
Target Start/End: Complemental strand, 34454592 - 34454483
Alignment:
Q  443 caaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacat 542  Q
    |||||||| |||||||| || |||||||| |   |||||||||||||||| |  |  |||||||||||||| |  |  ||||| ||||||| ||| ||||    
T  34454592 caaaagtcaaatgattaatatttgcaggggtagattggaaggattagtaacttcaaagacgaaaattcaaatgacctatatttgcagggacgaaggacat 34454493  T
Q  543 atttaagcct 552  Q
    ||||||||||    
T  34454492 atttaagcct 34454483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 552 - 886
Target Start/End: Complemental strand, 31027097 - 31026763
Alignment:
Q  552 taaatccaattcatgtaatcaaaagtaaagaaatccgttataaagttagatggaaccaaacatagccatacctgagtaacgtagacatagtcatgaagca 651  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  31027097 taaatccaattcatgtaatcaaaagtaaagaaatccgttataaagttagatggaaccaaacagagccatacctgagtagcgtagacatagtcatgaagca 31026998  T
Q  652 catgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctg 751  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31026997 catgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttctccgaaagttggtaaggatgtgttcctg 31026898  T
Q  752 agctgccaactagataaaagtttgtatacagtgtggtcctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaac 851  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31026897 agctgccaaccagataaaagtttgtatacagtgtggtcctttccagtcccacaaagatttcccatctccctctagagcatggatatccccatgttgcaac 31026798  T
Q  852 caatatgcactttgaatagtaaatttgtgagtatt 886  Q
    |||||  |||||||||||||||||| |||||||||    
T  31026797 caataaacactttgaatagtaaattggtgagtatt 31026763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 553
Target Start/End: Complemental strand, 32052332 - 32052222
Alignment:
Q  443 caaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacat 542  Q
    |||||||| |||||||| || ||||||||  |  |||||||||||||||| |  ||||||||||||||||| |  |  ||||||||||||| ||  ||||    
T  32052332 caaaagtcaaatgattaatatttgcaggggcggattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttacagggacgaaaaacat 32052233  T
Q  543 atttaagccta 553  Q
    |||||||||||    
T  32052232 atttaagccta 32052222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 423 - 552
Target Start/End: Original strand, 32052480 - 32052609
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  ||||||||||||||||| |  |  ||    
T  32052480 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctata 32052579  T
Q  523 tttacagggactaagcacatatttaagcct 552  Q
    ||| ||||||| ||  ||||||||||||||    
T  32052580 tttgcagggacgaaagacatatttaagcct 32052609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 423 - 550
Target Start/End: Complemental strand, 25253214 - 25253087
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  ||||||||||||||||| | ||  ||    
T  25253214 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaatgaactata 25253115  T
Q  523 tttacagggactaagcacatatttaagc 550  Q
    ||| ||||||  ||  ||||||||||||    
T  25253114 tttgcagggatgaaagacatatttaagc 25253087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 423 - 550
Target Start/End: Complemental strand, 25317004 - 25316877
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  ||||||||||||||||| | ||  ||    
T  25317004 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaatgaactata 25316905  T
Q  523 tttacagggactaagcacatatttaagc 550  Q
    ||| ||||||  ||  ||||||||||||    
T  25316904 tttgcagggatgaaagacatatttaagc 25316877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 33735569 - 33735659
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  |||||||||||||||||    
T  33735569 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaa 33735659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 37945122 - 37945032
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  |||||||||||||||||    
T  37945122 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaa 37945032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 555
Target Start/End: Complemental strand, 33735422 - 33735309
Alignment:
Q  442 ccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcaca 541  Q
    ||||||||| |||||||| || |||||||||    |||||||||||||||| |  ||||||||||| ||||| || |  |||||  |||||| ||  |||    
T  33735422 ccaaaagtcaaatgattaatatttgcagggacagattggaaggattagtaatttcagggacgaaaaatcaaatggcctatatttgtagggacgaaagaca 33735323  T
Q  542 tatttaagcctaaa 555  Q
    ||||||||||||||    
T  33735322 tatttaagcctaaa 33735309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 6421878 - 6421968
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||| ||| | ||||||||| |||||||| || ||||||||   | ||| |||||||||||| |  |||||||||||||||||    
T  6421878 taatcagatgtacttaggaccaaaagtcaaatgattaatatttgcaggggcatattgaaaggattagtaatttcagggacgaaaattcaaa 6421968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 14745576 - 14745486
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  ||||| |||||||||||    
T  14745576 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaa 14745486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 553 - 887
Target Start/End: Original strand, 34104077 - 34104411
Alignment:
Q  553 aaatccaattcatgtaatcaaaagtaaagaaatccgttataaagttagatggaaccaaacatagccatacctgagtaacgtagacatagtcatgaagcac 652  Q
    ||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||| |||||||    
T  34104077 aaatccaattcttgcaatcaaaagtaaaaaaatcagttataaagttagatggaaccaaacggagccatacctgagtagcgtagacacagtcacgaagcac 34104176  T
Q  653 atgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctga 752  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| ||||||||| || |||||||||||| |||| | |||| |    
T  34104177 atgaatggtagtctcatcatctctcccacatctagtacaaagtggagatatactcactccccacttgcttctctgaaagttggtaacgatgcgctcctaa 34104276  T
Q  753 gctgccaactagataaaagtttgtatacagtgtggtcctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaacc 852  Q
    ||||||||| |||| ||||||||||||||||||| || |||||||||| |||||||||||| |||  |||||| || ||||||||||| |||||||||||    
T  34104277 gctgccaacaagatgaaagtttgtatacagtgtgatcatttccagtcctacaaagatttccaatcatcctctagagtatggatatccctatgttgcaacc 34104376  T
Q  853 aatatgcactttgaatagtaaatttgtgagtatta 887  Q
     ||| ||||||||||||||||| ||||||||||||    
T  34104377 tataagcactttgaatagtaaacttgtgagtatta 34104411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 389 - 532
Target Start/End: Complemental strand, 53752398 - 53752255
Alignment:
Q  389 tcatcgccatgtcactaattatgtgacacataagtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggatta 488  Q
    |||| |||| || ||||||||||||||||||||||||||| ||||||||| | ||||||||| |||||||||||| |||||||| | ||||| |||||||    
T  53752398 tcattgccacgtgactaattatgtgacacataagtaatcagatgtaattaggaccaaaagtcaaatgattagtaaatgcagggaaggtttgggaggatta 53752299  T
Q  489 gtaagtatagggacgaaaattcaaacggaccctatttacaggga 532  Q
    |||||||||| ||||||||||||||||  ||| |||| ||||||    
T  53752298 gtaagtatagagacgaaaattcaaacgagccccatttgcaggga 53752255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 389 - 549
Target Start/End: Original strand, 53753356 - 53753516
Alignment:
Q  389 tcatcgccatgtcactaattatgtgacacataagtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggatta 488  Q
    |||| ||||||||| |||| | ||| ||| |||| | | | ||||||||| | ||||||||| ||||||||||||||||||| | ||||||| |||||||    
T  53753356 tcattgccatgtcattaatcacgtgccacgtaagcatttagatgtaattaggaccaaaagtcaaatgattagtaattgcaggaaagttttgggaggatta 53753455  T
Q  489 gtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaag 549  Q
     ||||||||||||||||||||||||||  | ||||||| |||||  || ||||||||||||    
T  53753456 ataagtatagggacgaaaattcaaacgagcactatttatagggatgaaacacatatttaag 53753516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 389 - 512
Target Start/End: Complemental strand, 13231401 - 13231278
Alignment:
Q  389 tcatcgccatgtcactaattatgtgacacataagtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggatta 488  Q
    |||||||||  |||||| | ||||| |||||||||||||| |||| |||  | |||||  || | |||||| ||||||||||||  |||||| |||||||    
T  13231401 tcatcgccacatcactagtcatgtgccacataagtaatcaaatgtgatttggaccaaatttcaagtgattaataattgcagggaaattttgggaggatta 13231302  T
Q  489 gtaagtatagggacgaaaattcaa 512  Q
    ||||||| |||||| |||||||||    
T  13231301 gtaagtacagggactaaaattcaa 13231278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 423 - 555
Target Start/End: Original strand, 22249989 - 22250121
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | | ||||||| |||||||| || ||||||||   | ||||||| |||||||| |  ||||||||||||||||| || |  ||    
T  22249989 taatcagatgtaattaggactaaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaatggcctata 22250088  T
Q  523 tttacagggactaagcacatatttaagcctaaa 555  Q
    ||| ||||||| ||  |||||||||||||||||    
T  22250089 tttgcagggacgaaagacatatttaagcctaaa 22250121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 423 - 552
Target Start/End: Complemental strand, 54961559 - 54961430
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| |  |||||||| |||||||| || ||||||||   | |||||||||||||||| |  ||||||||||||||||| || |  ||    
T  54961559 taatcagatgtaattatgatcaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcagggacgaaaattcaaatggtctata 54961460  T
Q  523 tttacagggactaagcacatatttaagcct 552  Q
    ||| ||||||| ||  || |||||||||||    
T  54961459 tttgcagggacgaaagacctatttaagcct 54961430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 554
Target Start/End: Complemental strand, 10128775 - 10128703
Alignment:
Q  482 aggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagcctaa 554  Q
    |||||||||||||| | |||  |||||||||||| ||||||||| |||||||||   ||||||||||||||||    
T  10128775 aggattagtaagtacatggagtaaaattcaaacgaaccctatttgcagggactataaacatatttaagcctaa 10128703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 12691534 - 12691444
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||| |||||    |||||||||||||||| |  |||||||||||||||||    
T  12691534 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgtagggacagattggaaggattagtaacttcagggacgaaaattcaaa 12691444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 47980813 - 47980723
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| |  |||||||| |||||||| || ||||||||||   |||||||||| ||||| |  |||||||||||||||||    
T  47980813 taatcagatgtaattaggatcaaaagtcaaatgattaatatttgcagggatagattggaaggatcagtaacttcagggacgaaaattcaaa 47980723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 423 - 551
Target Start/End: Original strand, 13872325 - 13872453
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     ||||||| |||||||| |  |||||| ||||||||||  |||  ||    
T  13872325 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaagaattagtaacttcagggacaaaaattcaaatagactata 13872424  T
Q  523 tttacagggactaagcacatatttaagcc 551  Q
    ||| ||||||| ||  |||||||||||||    
T  13872425 tttgcagggacgaaagacatatttaagcc 13872453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 477 - 553
Target Start/End: Original strand, 35602467 - 35602543
Alignment:
Q  477 ttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagccta 553  Q
    |||| |||||||||||||| |||||| ||||||||| ||   ||||||| ||||||||   ||||||||||||||||    
T  35602467 ttgggaggattagtaagtacagggactaaaattcaaccgaggcctatttgcagggactggacacatatttaagccta 35602543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 552
Target Start/End: Original strand, 53559653 - 53559772
Alignment:
Q  433 taattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacaggga 532  Q
    |||||| | ||||||||| |||||||| || ||||||||     |||||| ||||||||| |  ||||||||||||||||| || |  ||||| ||||||    
T  53559653 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaacgattagtaacttcagggacgaaaattcaaatggcctatatttgcaggga 53559752  T
Q  533 ctaagcacatatttaagcct 552  Q
    | ||  ||||||||||||||    
T  53559753 cgaaagacatatttaagcct 53559772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 34238598 - 34238508
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||   | ||| |||||||||||| |  || ||||||||||||||    
T  34238598 taatcagatgtaattatgaccaaaagtcaaatgattaatatttgcaggggcatattgaaaggattagtaacttcagagacgaaaattcaaa 34238508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 47862280 - 47862190
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | | ||||||| ||||||||||| ||||||||     |||||||||||||||| |  || ||||||||||||||    
T  47862280 taatcagatgtaattaggacaaaaagtcaaatgattagtatttgcaggggcagattggaaggattagtaacttcagagacgaaaattcaaa 47862190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 497
Target Start/End: Original strand, 48532281 - 48532326
Alignment:
Q  452 aatgattagtaattgcagggatgttttggaaggattagtaagtata 497  Q
    ||||||||||||||||| ||| |||||| |||||||||||| ||||    
T  48532281 aatgattagtaattgcatggaggttttgaaaggattagtaaatata 48532326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 4e-93; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 43699023 - 43698777
Alignment:
Q  3 ggaatttgaatctgatgatgtcgattgtaaggttagcgggtaccttctccccaagcatgtgtttctcttgctttcaatttgttgggctatgtcatgggat 102  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43699023 ggaatttgaatctgatgatgttgattgtaaggttagcgggtaccttctccccaagcatgtgtttctcttgctttcaatttgttgggctatgtcgtgggat 43698924  T
Q  103 tgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgactcatttggttttgtcggcgattacgttgtgtgttcatgataaagatgaaggtg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||            ||| ||||||||||||||||||    
T  43698923 tgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgagtcatttggttacgtcggcg------------gttgatgataaagatgaaggtg 43698836  T
Q  203 ggtttgatgtctgggattgtgatgttttgagtttggaagttcagattcatgtggggaag 261  Q
    |||||||||| | |||||||||||||||||| |||||||||||||||| ||| ||||||    
T  43698835 ggtttgatgtattggattgtgatgttttgagcttggaagttcagattcctgtagggaag 43698777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 385 - 512
Target Start/End: Complemental strand, 7463905 - 7463778
Alignment:
Q  385 cacgtcatcgccatgtcactaattatgtgacacataagtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaagg 484  Q
    ||||||||| |||| ||| |||| ||||| || ||||||||||| ||| ||||| | |||||| || |||||||| ||||||||   || |||||| |||    
T  7463905 cacgtcatcaccatctcattaatcatgtgtcatataagtaatcaaatgaaattatgaccaaaactcaaatgattaataattgcataaattttttgggagg 7463806  T
Q  485 attagtaagtatagggacgaaaattcaa 512  Q
    |||||||||||| |||||||||||||||    
T  7463805 attagtaagtatggggacgaaaattcaa 7463778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 385 - 512
Target Start/End: Complemental strand, 7482003 - 7481876
Alignment:
Q  385 cacgtcatcgccatgtcactaattatgtgacacataagtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaagg 484  Q
    ||||||||| |||| |||||||| ||||| || ||||||||||| |||  |||| | ||||||  | |||||||| ||||||||||||  ||| || ||     
T  7482003 cacgtcatcaccatctcactaatcatgtgccatataagtaatcaaatgagattatgaccaaaacccaaatgattaataattgcagggaaatttcgggaga 7481904  T
Q  485 attagtaagtatagggacgaaaattcaa 512  Q
    ||||||||||||||||||||||||||||    
T  7481903 attagtaagtatagggacgaaaattcaa 7481876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 553 - 793
Target Start/End: Original strand, 44812688 - 44812927
Alignment:
Q  553 aaatccaattcatgtaatcaaaagtaaagaaatccgttataaagttagatggaaccaaacatagccatacctgagtaacgtagacatagtcatgaagcac 652  Q
    ||||||||| |||| ||||||||||||||||||| ||||| || | ||||||||  |  |  |||||||| |||||  | || ||| | ||    || ||    
T  44812688 aaatccaatccatgcaatcaaaagtaaagaaatcagttatgaaatgagatggaattaggcggagccatacttgagtttcataaacacaatcccagagtac 44812787  T
Q  653 atgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctga 752  Q
    |||||||||||| ||||| ||| |||||||||||  ||||| ||||||||| |||| | | ||||||||| | |||||||||||||||||| | || ||     
T  44812788 atgaatggtagtttcatcttctctcccacatctaaaacaaa-tggagatatgcccacttcccacttgcttctacgaaagttggtaaggatgcgctcttgg 44812886  T
Q  753 gctgccaactagataaaagtttgtatacagtgtggtccttt 793  Q
    ||||  | | ||||||||||||| ||||| || ||||||||    
T  44812887 gctgtaagcaagataaaagtttgaatacaatgaggtccttt 44812927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 423 - 553
Target Start/End: Complemental strand, 10749446 - 10749316
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||||   || ||||||||||||| |  ||||||||||||||||| |  |  ||    
T  10749446 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcagggatagattagaaggattagtaacttcagggacgaaaattcaaatgacctata 10749347  T
Q  523 tttacagggactaagcacatatttaagccta 553  Q
    ||||||||||| ||  || ||||||||||||    
T  10749346 tttacagggacgaaagacctatttaagccta 10749316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 40257002 - 40256912
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||| ||   | |||||||||||||||| |  |||||||||||||||||    
T  40257002 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaagggcatattggaaggattagtaacttcagggacgaaaattcaaa 40256912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 385 - 469
Target Start/End: Original strand, 7482957 - 7483041
Alignment:
Q  385 cacgtcatcgccatgtcactaattatgtgacacataagtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcag 469  Q
    |||||||||||||  ||| |||||||||| |||||||| ||||| ||   |||| | |||||| || ||||||||||||||||||    
T  7482957 cacgtcatcgccacctcattaattatgtgccacataagcaatcaaattagattaggaccaaaactcaaatgattagtaattgcag 7483041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 477 - 555
Target Start/End: Complemental strand, 1741461 - 1741383
Alignment:
Q  477 ttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagcctaaa 555  Q
    |||||||||||||||| |  ||||||||||||||||| |  |  ||||| ||||||| ||  |||||||||||||||||    
T  1741461 ttggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagcctaaa 1741383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 722
Target Start/End: Original strand, 34633909 - 34633983
Alignment:
Q  649 gcacatgaatggtagtctcatcatc-tatcccacatctagtacaaagtggagatatacccaatcctcacttgctt 722  Q
    ||||||||||| |||| ||||| || | | |||||||||||||||||||||||||| ||||  || |||||||||    
T  34633909 gcacatgaatgttagtttcatcttcctcttccacatctagtacaaagtggagatatgcccatcccccacttgctt 34633983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 53037155 - 53037065
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| |  |||| ||| ||||| || || |||||||| | | |||||||||||||||| |  |||||||||||||||||    
T  53037155 taatcagatgtaattatgatcaaatgtcaaatgactaatatttgcaggggtatattggaaggattagtaacttcagggacgaaaattcaaa 53037065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 535
Target Start/End: Complemental strand, 20961087 - 20961034
Alignment:
Q  482 aggattagtaagtatagggacgaaaattcaaacggaccctatttacagggacta 535  Q
    ||||||||||||||||||| |||||||||||  |  |||||||| |||||||||    
T  20961087 aggattagtaagtataggggcgaaaattcaactgagccctatttgcagggacta 20961034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 430 - 552
Target Start/End: Complemental strand, 28533898 - 28533776
Alignment:
Q  430 atgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacag 529  Q
    ||||||||| | ||||||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||  |||||||| |||    
T  28533898 atgtaattaggaccaaaagtcaaatgattagtaattgcagggaaggtttgggaggattagtaagtatagggacgaaaattcaaacgagccctatttgcag 28533799  T
Q  530 ggactaagcacatatttaagcct 552  Q
    |||| || |||||||||||||||    
T  28533798 ggacgaaacacatatttaagcct 28533776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 568 - 743
Target Start/End: Original strand, 46011876 - 46012052
Alignment:
Q  568 aatcaaaagtaaagaaatccgtt-ataaagttagatggaaccaaacatagccatacctgagtaacgtagacatagtcatgaagcacatgaatggtagtct 666  Q
    ||||||||||||||||||| ||| || || | ||||||||| |  |  |||||||||| ||| || |||||| | |||   ||||||||||||||||| |    
T  46011876 aatcaaaagtaaagaaatcagtttatgaaataagatggaactaggcggagccatacctaagttacatagacacaatcacagagcacatgaatggtagttt 46011975  T
Q  667 catcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatg 743  Q
    |||| ||  | |||||||||| ||||||||||||||| |||| ||| ||||||||| | ||||| ||| ||||||||    
T  46011976 catcttcgctgccacatctaggacaaagtggagatatgcccactccccacttgcttctacgaaaattgttaaggatg 46012052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 423 - 552
Target Start/End: Complemental strand, 6056504 - 6056375
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || |||||||||  | |||||||||| ||||| | |||||||||||||||||| |  |  ||    
T  6056504 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcagggacatattggaaggatcagtaattttagggacgaaaattcaaatgacctata 6056405  T
Q  523 tttacagggactaagcacatatttaagcct 552  Q
    ||| ||||||| ||  ||||||||||||||    
T  6056404 tttgcagggacgaaagacatatttaagcct 6056375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 423 - 552
Target Start/End: Complemental strand, 739347 - 739218
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||   | |||||||||||||||| |  | ||||||||||||||| || |  ||    
T  739347 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcaaggacgaaaattcaaatggtctata 739248  T
Q  523 tttacagggactaagcacatatttaagcct 552  Q
    ||| ||||||| ||  || |||||||||||    
T  739247 tttgcagggacgaaaaacctatttaagcct 739218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 551
Target Start/End: Original strand, 2953720 - 2953848
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||||||||||||| | |||||| || |||||||| || ||||||||     |||||||||||||||| |  ||||||||||||||||| |  |  ||    
T  2953720 taatcatatgtaattaggaccaaaaatcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctata 2953819  T
Q  523 tttacagggactaagcacatatttaagcc 551  Q
    ||| ||||||| ||  |||||||||||||    
T  2953820 tttgcagggacgaaagacatatttaagcc 2953848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 551
Target Start/End: Original strand, 5183762 - 5183890
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||||||||||||| | ||||||||| |||||||| || ||||||||     ||||||||||| |||| |  ||||||||||||||||| || |  ||    
T  5183762 taatcatatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattcgtaacttcagggacgaaaattcaaatggcctata 5183861  T
Q  523 tttacagggactaagcacatatttaagcc 551  Q
    ||| ||||||| ||  || ||||||||||    
T  5183862 tttgcagggacaaaagacgtatttaagcc 5183890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 552
Target Start/End: Original strand, 13873218 - 13873351
Alignment:
Q  417 cataagtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacgg 516  Q
    |||||||||| | ||||||||| |  ||||| ||| |||||||   |||||||||   ||||||||||||||||||||||||| || |||||||||        
T  13873218 cataagtaattagatgtaattaggatcaaaattcggatgattat--attgcagggcaattttggaaggattagtaagtataggaacaaaaattcaagtaa 13873315  T
Q  517 accctatttacagggactaagcacatatttaagcct 552  Q
    | | ||||| ||||||||||  ||||||||||||||    
T  13873316 atcatatttgcagggactaaatacatatttaagcct 13873351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 423 - 550
Target Start/End: Original strand, 37152794 - 37152921
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | | ||||||| |||||||| || ||||||||     |||||||||||||||| |  || |||||||||||||| ||||  ||    
T  37152794 taatcagatgtaattaggactaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagagacgaaaattcaaatggactata 37152893  T
Q  523 tttacagggactaagcacatatttaagc 550  Q
    ||| ||||||| ||  ||||||||||||    
T  37152894 tttgcagggacgaaagacatatttaagc 37152921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 1040426 - 1040336
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||||||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  |||||| ||||||||||    
T  1040426 taatcatatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacaaaaattcaaa 1040336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 1047332 - 1047242
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||||||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  |||||| ||||||||||    
T  1047332 taatcatatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacaaaaattcaaa 1047242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 551
Target Start/End: Complemental strand, 2953582 - 2953464
Alignment:
Q  433 taattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacaggga 532  Q
    |||||| | ||||||||| |||||||| || ||||||||     ||| |||||||||||| | |||||||||||||||||| |  |  ||||||||||||    
T  2953582 taattatgaccaaaagtcaaatgattaatatttgcaggggcagattgaaaggattagtaactttagggacgaaaattcaaatgacctatatttacaggga 2953483  T
Q  533 ctaagcacatatttaagcc 551  Q
    | ||  |||||||||||||    
T  2953482 cgaaagacatatttaagcc 2953464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 25415100 - 25415190
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||| ||| || ||||||| |  | |||||||||||||||| |  ||| |||||||||||||    
T  25415100 taatcagatgtaattaggaccaaaagtcaaatggttaatatttgcaggaacatattggaaggattagtaacttcaggaacgaaaattcaaa 25415190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 46849914 - 46850004
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||| ||||| |  |||||||||||||||||    
T  46849914 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggatcagtaacttcagggacgaaaattcaaa 46850004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 386 - 555
Target Start/End: Original strand, 15075095 - 15075264
Alignment:
Q  386 acgtcatcgccatgtcactaattatgtgacacataagtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaagga 485  Q
    ||||||||||||  | | |||| ||||| |||||||| | ||| | || |||| | |||||| |  ||||||||||||||||| |||  |||||||||||    
T  15075095 acgtcatcgccacattagtaatcatgtgccacataagcactcaaacgtgattaggaccaaaaattaaatgattagtaattgcatggaaattttggaagga 15075194  T
Q  486 ttagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagcctaaa 555  Q
    |||||||||| || ||| |||||||||||  ||||||||| | |||||||   |||||||||||||||||    
T  15075195 ttagtaagtacagagactaaaattcaaacaaaccctatttgctgggactatagacatatttaagcctaaa 15075264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 389 - 551
Target Start/End: Original strand, 14243930 - 14244092
Alignment:
Q  389 tcatcgccatgtcactaattatgtgacacataagtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggatta 488  Q
    ||||||| | ||||||||| ||||| |||||||||||||| |||  |||| | | |||| || ||||||||||| |||||||||  || |||| ||| ||    
T  14243930 tcatcgctacgtcactaatcatgtgccacataagtaatcaaatgagattaggactaaaactcaaatgattagtatttgcagggaaattgtggagggaata 14244029  T
Q  489 gtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagcc 551  Q
     |||||| | |||| ||||||||||||  |||||||| ||||  |||  ||||||||||||||    
T  14244030 ataagtacatggacaaaaattcaaacgagccctatttgcaggagctatacacatatttaagcc 14244092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 16367219 - 16367309
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||||||||||||| | ||||||||| |||||||| || ||||||||   | |||||||||||||||| |  |||||||||||||||||    
T  16367219 taatcatatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcagggacgaaaattcaaa 16367309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 423 - 551
Target Start/End: Original strand, 45663764 - 45663892
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     || ||||||||||||| |  |||||||||||||||||  |||  ||    
T  45663764 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcagggccagatttgaaggattagtaacttcagggacgaaaattcaaattgactata 45663863  T
Q  523 tttacagggactaagcacatatttaagcc 551  Q
    ||||||||||| ||  |||||||||||||    
T  45663864 tttacagggacgaaagacatatttaagcc 45663892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 433 - 552
Target Start/End: Complemental strand, 16367081 - 16366962
Alignment:
Q  433 taattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacaggga 532  Q
    |||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  ||||||||||||||||| |  |  ||||||||||||    
T  16367081 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttacaggga 16366982  T
Q  533 ctaagcacatatttaagcct 552  Q
    | ||  ||||||||||||||    
T  16366981 cgaaagacatatttaagcct 16366962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 1150065 - 1149975
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  |||||||||||||||||    
T  1150065 taatcaaatgtaattaggaccaaaagtcaaatgattaatatttgcaggggccgattggaaggattagtaacttcagggacgaaaattcaaa 1149975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 20911258 - 20911168
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  |||||||||||||||||    
T  20911258 taatcagatgtaattatgaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaa 20911168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 535
Target Start/End: Original strand, 34404970 - 34405063
Alignment:
Q  442 ccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggacta 535  Q
    |||||| || ||||||||| | |||||||||  |||||| |||||||||||||| | |||| |||||||||  |  |||||||| |||||||||    
T  34404970 ccaaaactcaaatgattagaatttgcagggaaattttgggaggattagtaagtacatggactaaaattcaattgagccctatttgcagggacta 34405063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 423 - 551
Target Start/End: Complemental strand, 32519283 - 32519155
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| |||||||||   ||||||||| |||||||| || |||||||    | |||||||||||||||| |  ||||||||||||||||| |  |  ||    
T  32519283 taatcagatgtaattagaaccaaaagtcaaatgattaatatttgcaggagcatattggaaggattagtaatttcagggacgaaaattcaaatgacctata 32519184  T
Q  523 tttacagggactaagcacatatttaagcc 551  Q
    ||| ||||||| ||  |||||||||||||    
T  32519183 tttgcagggacgaaagacatatttaagcc 32519155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 477 - 551
Target Start/End: Complemental strand, 10446906 - 10446832
Alignment:
Q  477 ttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagcc 551  Q
    |||||||||||||||| |  ||||||||||||||||| || |  ||||| ||||||| ||  |||||||||||||    
T  10446906 ttggaaggattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaagcc 10446832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 477 - 555
Target Start/End: Complemental strand, 13646154 - 13646076
Alignment:
Q  477 ttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagcctaaa 555  Q
    |||| |||||||||||||| |||||| |||||||||  |   ||||||| ||||||||   ||||||||||||||||||    
T  13646154 ttgggaggattagtaagtacagggactaaaattcaactgaggcctatttgcagggactggacacatatttaagcctaaa 13646076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 15074073 - 15074012
Alignment:
Q  454 tgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacg 515  Q
    ||||||| |||||| ||||  |||||||| |||||||||||  |||||| ||||||||||||    
T  15074073 tgattagaaattgcggggaaattttggaatgattagtaagtgcagggactaaaattcaaacg 15074012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 552
Target Start/End: Original strand, 22731788 - 22731917
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||| | | ||||||||| |||||||| || |||||||||    ||| ||||| |||||| |  | ||||||||||||||| || |  ||    
T  22731788 taatcagatgtaataaggaccaaaagtcaaatgattaatatttgcagggacagattgaaaggaatagtaacttcacggacgaaaattcaaatggcctata 22731887  T
Q  523 tttacagggactaagcacatatttaagcct 552  Q
    ||| ||||||| ||  ||||||||||||||    
T  22731888 tttgcagggacgaaagacatatttaagcct 22731917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 604 - 887
Target Start/End: Complemental strand, 27365372 - 27365091
Alignment:
Q  604 gaaccaaacatagccatacctgagtaacgtagacatagtcatgaagcacatgaatggtagtctcatcatctatcccacatctagtacaaagtggagatat 703  Q
    ||||||||||||||||||| ||||||  ||| |||||||| ||||||| ||||| ||| |||||||| ||| | |||||||||||||||||  |||||||    
T  27365372 gaaccaaacatagccatacttgagtagtgtaaacatagtcttgaagcatatgaacggttgtctcatcctctct-ccacatctagtacaaagcagagatat 27365274  T
Q  704 acccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctgagctgccaactagataaaagtttgtatacagtgtggtcctttccagtcccac 803  Q
      ||| ||| ||||||||| |||  || ||||| |||||||| |   ||||  |||| | ||  |||||||| ||||| ||  ||||| | || ||| |     
T  27365273 gaccactccccacttgcttctccagaaattggtgaggatgtgctatggagccaccaa-ttgacgaaagtttggatacaatgaagtcctcttcaatcctat 27365175  T
Q  804 aaagatttcccatctccctctatagcatggatatccccatgttgcaaccaatatgcactttgaatagtaaatttgtgagtatta 887  Q
    ||||| |||| |||| |||| |  || ||||||||||||||||| |||  |||  |||| ||| ||||||||| ||||||||||    
T  27365174 aaagacttccaatcttcctccagggcgtggatatccccatgttgtaacgtataatcactctgactagtaaattggtgagtatta 27365091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 453 - 552
Target Start/End: Complemental strand, 43073661 - 43073562
Alignment:
Q  453 atgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagcct 552  Q
    |||||||||||||||||||| | ||| | |||||| |||||| ||||||| ||||||||||||  |||||||| ||||||| || |||||||||||||||    
T  43073661 atgattagtaattgcagggaaggtttaggaggattggtaagtgtagggacaaaaattcaaacgagccctatttgcagggacgaaacacatatttaagcct 43073562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 423 - 552
Target Start/End: Complemental strand, 25287920 - 25287791
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  ||||||||||||||||| || |  ||    
T  25287920 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggccaata 25287821  T
Q  523 tttacagggactaagcacatatttaagcct 552  Q
    ||||||||||| ||  ||||||||||||||    
T  25287820 tttacagggacgaaagacatatttaagcct 25287791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 423 - 553
Target Start/End: Complemental strand, 43866839 - 43866709
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||   | ||||||| |||||||| |  ||||||||||||||||| || |  ||    
T  43866839 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaatggcctata 43866740  T
Q  523 tttacagggactaagcacatatttaagccta 553  Q
    ||| ||||||| ||  |||||||||||||||    
T  43866739 tttgcagggacgaaagacatatttaagccta 43866709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 423 - 552
Target Start/End: Original strand, 36623609 - 36623738
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||   | ||||||| |||||||| |  ||||||||||||||||| || |  ||    
T  36623609 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaatggcctata 36623708  T
Q  523 tttacagggactaagcacatatttaagcct 552  Q
    ||| ||||||| ||  ||||||||||||||    
T  36623709 tttgcagggacgaaagacatatttaagcct 36623738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 423 - 552
Target Start/End: Original strand, 7649 - 7778
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||   | |||||||||||||||| |  | ||||||||||||||| || |  ||    
T  7649 taatcagatgtaattatgaccaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcatggacgaaaattcaaatggcctata 7748  T
Q  523 tttacagggactaagcacatatttaagcct 552  Q
    ||| ||||||| ||  || |||||||||||    
T  7749 tttgcagggacgaaagacctatttaagcct 7778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 26739845 - 26739755
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||| ||| |||||||| || |||||||||  | ||| |||||||||||| |  |||||||||||||||||    
T  26739845 taatcagatgtaattaggaccaaacgtcaaatgattaatatttgcagggacatattgaaaggattagtaatttcagggacgaaaattcaaa 26739755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 37343038 - 37343128
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||   | ||||||| |||||||| |  |||||||||||||||||    
T  37343038 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaa 37343128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 27856872 - 27856787
Alignment:
Q  421 agtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaa 506  Q
    |||||||| ||||||||| | ||||||||| |||||||| || ||||||||  |  |||||||||||||||| |  ||||||||||    
T  27856872 agtaatcaaatgtaattaagaccaaaagtcaaatgattaatatttgcaggggcggattggaaggattagtaacttcagggacgaaa 27856787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 11478273 - 11478183
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| ||||||||||| |||||||| || ||||||||     ||| |||||||||||| |  | |||||||||||||||    
T  11478273 taatcagatgtaattagggccaaaagtcaaatgattaatatttgcaggggcagattgaaaggattagtaacttcaaggacgaaaattcaaa 11478183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 433 - 511
Target Start/End: Complemental strand, 29190278 - 29190200
Alignment:
Q  433 taattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattca 511  Q
    |||||| | ||||||||| |||||||| || ||||||||||   |||||||||||||||| |  || ||||||||||||    
T  29190278 taattaggaccaaaagtcaaatgattaatatttgcagggatagattggaaggattagtaacttcagagacgaaaattca 29190200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 477 - 555
Target Start/End: Original strand, 41773640 - 41773718
Alignment:
Q  477 ttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagcctaaa 555  Q
    |||| |||||||||||||| |||||| |||||||||  |   ||||||| ||||||||   ||||||||||||||||||    
T  41773640 ttgggaggattagtaagtacagggactaaaattcaactgaggcctatttgcagggactggacacatatttaagcctaaa 41773718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 512
Target Start/End: Complemental strand, 41251243 - 41251162
Alignment:
Q  431 tgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaa 512  Q
    |||||||| | ||||||||| |||||||| || ||| |||||  | |||||||||||||||| |  || |||||||||||||    
T  41251243 tgtaattatgaccaaaagtcaaatgattaatatttgtagggacatattggaaggattagtaacttcagagacgaaaattcaa 41251162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 648 - 739
Target Start/End: Original strand, 6323565 - 6323656
Alignment:
Q  648 agcacatgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaag 739  Q
    ||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||| |||| ||| ||||||||| | ||||| ||||||||    
T  6323565 agcacatgaatggtagtttcatcttctctcccacatctagaacaaagtggagatatgcccactccccacttgcttctacgaaaattggtaag 6323656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 689 - 887
Target Start/End: Complemental strand, 3060440 - 3060242
Alignment:
Q  689 acaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctgagctgccaactagataaaagtttgtatacagtgtggt 788  Q
    |||||||| |||||| |||| ||| || |||||| | | ||||||||||||||||||||| || ||  | | | | ||||||||||| |||   || |||    
T  3060440 acaaagtgcagatatgcccactccccatttgcttctacaaaagttggtaaggatgtgttcttgggccacaagccaaataaaagtttgaatatgatgaggt 3060341  T
Q  789 cctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaaccaatatgcactttgaatagtaaatttgtgagtatta 887  Q
    | |||||||||| ||||||| |||  |||||| || |  ||||| ||||| ||||||||||||| ||| |||||| |||| |||||||  |||||||||    
T  3060340 catttccagtccaacaaagaattctaatctccttcaaaggcatgaatatctccatgttgcaacctataagcacttcgaatggtaaattgatgagtatta 3060242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 389 - 556
Target Start/End: Complemental strand, 22540162 - 22539995
Alignment:
Q  389 tcatcgccatgtcactaattatgtgacacataagtaatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggatta 488  Q
    ||||||||| ||||||||| |  || |||| ||||||||| |||  ||||   |||||| || ||||||| ||||||| |||||   |||| ||||||||    
T  22540162 tcatcgccacgtcactaatcaattgccacaaaagtaatcaaatgagattagaaccaaaattcaaatgattggtaattgtagggaaagtttgaaaggatta 22540063  T
Q  489 gtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagcctaaat 556  Q
    |||||||||| |||||||| | ||  |    ||||||||| ||||||| |||||||||||||||||||    
T  22540062 gtaagtatagcgacgaaaacttaactgagatctatttacaaggactaaacacatatttaagcctaaat 22539995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 430 - 555
Target Start/End: Complemental strand, 13480329 - 13480204
Alignment:
Q  430 atgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacag 529  Q
    ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  ||||||||||||||||| || |  ||||| |||    
T  13480329 atgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggcctatatttgcag 13480230  T
Q  530 ggactaagcacatatttaagcctaaa 555  Q
    |||| ||  |||||||||||||||||    
T  13480229 ggacgaaagacatatttaagcctaaa 13480204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 475 - 556
Target Start/End: Complemental strand, 15523865 - 15523785
Alignment:
Q  475 ttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacagggactaagcacatatttaagcctaaat 556  Q
    |||||||| |||||||||||||| |  |||||||||||| | ||| ||||||| |||||||| |||||||||||||||||||    
T  15523865 ttttggaaagattagtaagtataagagcgaaaattcaaatgaaccatatttac-gggactaaacacatatttaagcctaaat 15523785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 21880620 - 21880710
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||| ||| || ||||||||||   |||||||||||||||| |  |||||||||||||||||    
T  21880620 taatcagatgtaattaggaccaaaagtcaaatgcttaatatttgcagggatagattggaaggattagtaacttcagggacgaaaattcaaa 21880710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 32337692 - 32337602
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||   | |||||||||||||||| |  |||||||||||||||||    
T  32337692 taatcagatgtaattaggcccaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcagggacgaaaattcaaa 32337602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 786 - 874
Target Start/End: Original strand, 6323681 - 6323769
Alignment:
Q  786 ggtcctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaaccaatatgcactttgaatagtaaa 874  Q
    ||||||||| |||||||||| || |||| |||||| || |  ||||| ||||| ||||||||||||| ||| ||||||||||| |||||    
T  6323681 ggtcctttctagtcccacaatgaattccaatctccttccaaggcatgaatatctccatgttgcaacctataagcactttgaatggtaaa 6323769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 433 - 552
Target Start/End: Original strand, 15819756 - 15819875
Alignment:
Q  433 taattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggaccctatttacaggga 532  Q
    |||||| | ||||||||| ||||||||||| ||||| || |   |||||||||||||||| |  ||||||||||||||||| |  |  ||||| ||||||    
T  15819756 taattaggaccaaaagtcaaatgattagtatttgcaagggtagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcaggga 15819855  T
Q  533 ctaagcacatatttaagcct 552  Q
    | ||  ||||||||||||||    
T  15819856 cgaaagacatatttaagcct 15819875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 443 - 513
Target Start/End: Original strand, 23292020 - 23292090
Alignment:
Q  443 caaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    |||||||| |||||||| || ||||||||||   |||||||||||||||| |  |||||||||||||||||    
T  23292020 caaaagtcaaatgattaatatttgcagggatagattggaaggattagtaacttcagggacgaaaattcaaa 23292090  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 550
Target Start/End: Complemental strand, 23291872 - 23291745
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  ||||| ||||||||||| || |  ||    
T  23291872 taatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaatggcctata 23291773  T
Q  523 tttacagggactaagcacatatttaagc 550  Q
    |||  |||||| ||  ||||||||||||    
T  23291772 tttgtagggacgaaagacatatttaagc 23291745  T

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Target: scaffold1493 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 423 - 552
Target Start/End: Original strand, 849 - 978
Alignment:
Q  423 taatcatatgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaacggacccta 522  Q
    |||||| || |||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  ||||||||||||||||| || |  ||    
T  849 taatcagatataattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggccaata 948  T
Q  523 tttacagggactaagcacatatttaagcct 552  Q
    ||||||||||| ||  ||||||||||||||    
T  949 tttacagggacgaaagacatatttaagcct 978  T

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Target: scaffold0206 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 430 - 513
Target Start/End: Complemental strand, 10446 - 10363
Alignment:
Q  430 atgtaattacggccaaaagtcgaatgattagtaattgcagggatgttttggaaggattagtaagtatagggacgaaaattcaaa 513  Q
    ||||||||| | ||||||||| |||||||| || ||||||||     |||||||||||||||| |  |||||||||||||||||    
T  10446 atgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaa 10363  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 717
Target Start/End: Original strand, 51320 - 51419
Alignment:
Q  618 catacctgagtaacgtagacatagtcatgaagcacatgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcact 717  Q
    ||||||||| || | |||||| |||| |||||||||| ||||||||| ||||  ||| | || |||||||||   ||||||||||| |||| ||||||||    
T  51320 catacctgattagcatagacacagtcttgaagcacattaatggtagtttcattttctcttccgcatctagtatgtagtggagatatgcccactcctcact 51419  T

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