View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2714_high_2 (Length: 498)
Name: NF2714_high_2
Description: NF2714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2714_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 30466041 - 30466518
Alignment:
| Q |
1 |
atgtaattatttgttttgtctttgaagtttactcatttgttgaatcaattattatttctttatttcttgctagtaattaatgactaattgttttggcatc |
100 |
Q |
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| T |
30466041 |
atgtaattatttgttttgtctttgaagtttactcatttgttgaatcaattattatttctttatttcttgccagtaattaatgactaattgttttggcatc |
30466140 |
T |
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| Q |
101 |
ttatagatttttaaagaaatatcaaatattagtgatgatgagcatattggtgtgaagagaattagggacctcaataccaaaccattcatcaatgctatga |
200 |
Q |
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| T |
30466141 |
ttatagatttttaaagaaatatcaaatattagtgatgatgagcatattggtgtgaagagaattagggacctcaataccaaaccattcatcaatgctatga |
30466240 |
T |
|
| Q |
201 |
agaaaagatacaatgcagatgaagctgaaattagagcttcaagactgtgttctttatgggtcgaaaatataaaggacacaaattggaatccagtcaaaat |
300 |
Q |
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| T |
30466241 |
agaaaagatacaatgcagatgaagctgaaattagagcttcaagactgtgttctttatgggtcgaaaatataaaggacacaaattggaatccagtcaaaat |
30466340 |
T |
|
| Q |
301 |
tgttttcgttgatggggtagctaaggtatagttctaactcctgttacttttaatcgaatttggttcatcatcatctgttgcttgttttattacataggac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30466341 |
tgttttcgttgatggggtagctaaggtatagttctaactcctgttacttttaatcgaatttggt------tcatctgttgcttgttttattacataggac |
30466434 |
T |
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| Q |
401 |
aggaaatatttgattgatggaccctttatattta--nnnnnnnattatagcaagttataattaacgatgcacatggaaagttga |
482 |
Q |
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|||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30466435 |
aggaaatatttgatcgatggaccctttatttttatttttttttattatagcaagttataattaacgatacacatggaaagttga |
30466518 |
T |
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