View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2714_high_5 (Length: 383)
Name: NF2714_high_5
Description: NF2714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2714_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 41856269 - 41856067
Alignment:
| Q |
12 |
atgaatgaggcccgtgtggtagctaggtttgtgcttttttggaaagttttaaggacattaaatcgacatgataannnnnnnaggcaagcaaactttatca |
111 |
Q |
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| T |
41856269 |
atgaatgaggcccgtgtggtagctaggtttgtgcttttttgaaaagttttaaggacattaaatcgacatgataatttttttaggcaagcaaactttatca |
41856170 |
T |
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| Q |
112 |
tttcgttgataactacatcttgcatgcaacttaggtattgggcattgttgtgaggtaattcatgtcttagaaggattattgtgatgtatgtaagttgtga |
211 |
Q |
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| T |
41856169 |
tttcgttgataactacatcttgcatgcaacttaggtattgggcattgttgtgaggtaattcatgtcttagaaggattattgtgatgtatgtaagttgtga |
41856070 |
T |
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| Q |
212 |
att |
214 |
Q |
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||| |
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| T |
41856069 |
att |
41856067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 238 - 366
Target Start/End: Complemental strand, 41856046 - 41855916
Alignment:
| Q |
238 |
acatatgttgtgaattgattatagttcaatatatattgtatgataactgttttggttagttggttggtgacttgttgaacaagttagagaagttagtctg |
337 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
41856046 |
acatatgttgtgaattgattgtagttcaatatatattgtatgataactgttttagttagtcggttggtgacttgttgaacaagttagagaagttggtctg |
41855947 |
T |
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| Q |
338 |
--tctactatttttgagtcaagctaaaatat |
366 |
Q |
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| T |
41855946 |
tctctactatctttgagtcaagctaaaatat |
41855916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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