View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2714_low_7 (Length: 205)
Name: NF2714_low_7
Description: NF2714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2714_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 39526458 - 39526654
Alignment:
| Q |
1 |
taggttcatctttagttgatcaaattttcatatctgatgcaaatggaataaattgggttgaatttgtgaaaggctataacaagtgctgttctcgggtttc |
100 |
Q |
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| T |
39526458 |
taggttcatctttagttgatcaatttttcatatctgatgcaaatggaataaattgggttgaatttgtgaaaggctataacaagtgctgttctcgggtttc |
39526557 |
T |
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| Q |
101 |
tgcttcgatttttctgaacaagtttatcagagtcttctttgatgttagataaaaagcaaatttggataatcattcggaatttgaatctgatgatgtc |
197 |
Q |
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| T |
39526558 |
tgcatcgatttttctgaacaagtttatcagagtgttcgttgatgttagataaaaagcaaatttggataatcattcggaatttgaatctgatgatgtc |
39526654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 43699198 - 43699003
Alignment:
| Q |
1 |
taggttcatctttagttgatcaaattttcatatctgatgcaaatggaataaattgggttgaatttgtgaaaggctataacaagtgctgttctcgggtttc |
100 |
Q |
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||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
43699198 |
taggttcatctttagttgatcaatttttcatttctgatgataatggaataaactgggttgaatttgtgaaaggctataacaagtgttgttcaagggtttc |
43699099 |
T |
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| Q |
101 |
tgcttcgatttttctgaacaagtttatcagagtcttctttgatgttagataaaaagcaaatttggataatcattcggaatttgaatctgatgatgt |
196 |
Q |
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||| |||||||||||||||||||| || ||||| ||| ||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||| |
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| T |
43699098 |
tgcatcgatttttctgaacaagttcattagagtattcgttgatgttactaaaaaagcgaatttggatgttcatttggaatttgaatctgatgatgt |
43699003 |
T |
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