View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2715_high_1 (Length: 906)
Name: NF2715_high_1
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 597; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 7 - 887
Target Start/End: Complemental strand, 34637918 - 34637038
Alignment:
| Q |
7 |
tcgaagaatatcaaacaacactcacaaatgcctatatcgatccaccatggaatttagtgggttttgcacgatagatgattcgcaaaacacagcatttttc |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34637918 |
tcgaagaaaatcaaacaacactcacaaatgcctatatcgatccaccatggtatttagtgggttttgcacgatagatgattcgcaaaacacagcatttttc |
34637819 |
T |
|
| Q |
107 |
attcaaacaacacaagtttttgaaaacgtatttccattcaaagatacactttgaatcagctatcttcatcattccagtgaagcaatggtgtctccatctc |
206 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34637818 |
attcaaacaacacaagtttttgaaaatgtatttcccttcaaagatacaccttgaatcagctatcttcatcattccagtgaagcaatggtgtctccatctc |
34637719 |
T |
|
| Q |
207 |
tctctaccaacctcccttctcaccttagtcttaaactcctcaaggaagctttggacgtgcgaaatttcaagcgtgcccgccaactgtttgataatattcc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34637718 |
tctctaccaacctcccttctcaccttagtcttaaactcctcaaggaagctttggacgtgcgaaatttcaagcgtgcccgccaactgtttgataatattcc |
34637619 |
T |
|
| Q |
307 |
tcaaccagactcaactacttcttcaactataatttcagctttaaccactcatggtcttccaaatgaagccattaacgtatatacttcgttgcgggcacgt |
406 |
Q |
| |
|
|||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||| | | |||||||||||||| |||| |
|
|
| T |
34637618 |
tcaaccagaccccactacttcttcaactcttatttcagctttaaccactcatggtcttctaaatgaggccattaacatctgtacttcgttgcgggaacgt |
34637519 |
T |
|
| Q |
407 |
gggatcaaacccaacatacctgtgtttatggctgtagccaaggcttgtgctgcttctcgtgatgctttgaaagtcaaggaacttcacaatgatgcaactc |
506 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
34637518 |
gggatcaaactcgacatacctgtgtttatggctgtagccaaggcttgtgctgcttctcgtgatgccttgaatgtcaaggaacttcacaatgacgcaactc |
34637419 |
T |
|
| Q |
507 |
ggtgtggggcgatgtttaatgnnnnnnnnggcaatgcattgattcatgcttatggtaaatgtaaatgcgttgagggtgcacgccgtgtttttgatgatct |
606 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||||||||| | |
|
|
| T |
34637418 |
ggtgtggggcgatgtttaatgttttcgttggcaatgcattgattcatgcatatggtaaatgtaaatgcgttgagggtgaaagacgtgtttttgatgatat |
34637319 |
T |
|
| Q |
607 |
ggttgttagagatgtggttacttggaactcgttgtccgcatgttatatggattgtggatttccaaagcaaggtcttaatgtttttcgtgaaatgggatgg |
706 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||| | || ||| | |||||||||||||| || | ||||| |||||||||| ||||||||||||| |
|
|
| T |
34637318 |
ggttgttagagatgtggtttcttgaacctcgttgtcctcgtgctatgtcgattgtggatttcctcagaagggtctaaatgtttttcatgaaatgggatgg |
34637219 |
T |
|
| Q |
707 |
aatggggtgaaaccggatccagtgtctgtgtctagcattttgcgtgcgtgctcaaaattgcgagatttgaaatcaggtaaagaaatccatggatttgcag |
806 |
Q |
| |
|
||||||||||| | |||||||||| ||||||||||||| |||| ||||||| | | ||| |||||||||||||||||||| || ||||||||||| | |
|
|
| T |
34637218 |
aatggggtgaagctggatccagtgactgtgtctagcatcttgcctgcgtgcgccgatttgaaagatttgaaatcaggtaaagctattcatggatttgcgg |
34637119 |
T |
|
| Q |
807 |
tgagacatggtatggtagaaaaattgtctgtttgcaatgcccttttgaacatgtatgcaaaatgtctatgtgtaagcgaag |
887 |
Q |
| |
|
||||| | || ||||| ||||| ||| |||||||||||||||| ||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
34637118 |
tgagaaacgggatggtggaaaatgtgtttgtttgcaatgcccttgtgaacttgtatgcaaaatgtttatgtgtaagagaag |
34637038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 270 - 643
Target Start/End: Original strand, 33899120 - 33899503
Alignment:
| Q |
270 |
atttcaagcgtgcccgccaactgtttgataatattcctcaaccagactcaactacttcttcaactataatttcagctttaaccactcatggtcttccaaa |
369 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| |||||| | ||||||||||||| | |||||| ||||| ||||||||| ||||||||| |
|
|
| T |
33899120 |
atttcaagcgtgctcgctaactgtttgataatattcctcatccagacgccactacttcttcaatttgtatttcatctttatccactcatgctcttccaaa |
33899219 |
T |
|
| Q |
370 |
tgaagccattaacgtatatacttcgtt-gcgggcacgtgggatcaaacccaacatacctgtgtttatggctgtagccaaggcttgtgctgcttctc---- |
464 |
Q |
| |
|
||| ||||||||| | ||||||||||| ||||||||||||||||||||| || |||||||| ||| || | ||||||||||||||||||| |
|
|
| T |
33899220 |
tgaggccattaacatctatacttcgttggcgggcacgtgggatcaaacctgtcaggcctgtgttcttggtagttgttaaggcttgtgctgcttctcgtga |
33899319 |
T |
|
| Q |
465 |
---gtgatgctttgaaagtcaaggaacttcacaatgatgcaact--cggtgtggggcgatgtttaatgnnnnnnnnggcaatgcattgattcatgcttat |
559 |
Q |
| |
|
||||||| || | ||| |||||| |||| |||||| |||| |||||||| ||| | ||| |||||||||||||||||||||| | |
|
|
| T |
33899320 |
atggtgatgccttcagagttaaggaagttcatgatgatgtaacttagtgtgtggggtattgtctgatgttttcattggcaatgcattgattcatgcttgt |
33899419 |
T |
|
| Q |
560 |
ggtaaatgtaaatgcgttgagggtgcacgccgtgtttttgatgatctggttgttagagatgtggttacttggaactcgttgtcc |
643 |
Q |
| |
|
|| ||||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
33899420 |
ggcaaatgtaaatgcgttgagggtgcgagatatgtttttgatgatttggttgtttgagatgtggttacttggaactcattgtcc |
33899503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 660 - 869
Target Start/End: Complemental strand, 29056006 - 29055797
Alignment:
| Q |
660 |
gtggatttccaaagcaaggtcttaatgtttttcgtgaaatgggatggaatggggtgaaaccggatccagtgtctgtgtctagcattttgcgtgcgtgctc |
759 |
Q |
| |
|
|||||||||| ||||||||||||| |||| | |||||||||| |||||||||||||| | | || ||| || || ||| ||||||| || |||||| |
|
|
| T |
29056006 |
gtggatttcctcagcaaggtcttaaggtttgtaatgaaatgggacagaatggggtgaaactgaacccggtgactatgcttagtattttgcctgtgtgctc |
29055907 |
T |
|
| Q |
760 |
aaaattgcgagatttgaaatcaggtaaagaaatccatggatttgcagtgagacatggtatggtagaaaaattgtctgtttgcaatgcccttttgaacatg |
859 |
Q |
| |
|
| |||| ||||||||||| |||||||||||| |||| ||||| |||||||| ||||||||||||| |||| |||||| |||||| | ||||| || |
|
|
| T |
29055906 |
ggatttgcaagatttgaaattaggtaaagaaattcatgaatttgtgatgagacatagtatggtagaaaatttgtttgtttgtaatgccttggtgaacttg |
29055807 |
T |
|
| Q |
860 |
tatgcaaaat |
869 |
Q |
| |
|
|||||||||| |
|
|
| T |
29055806 |
tatgcaaaat |
29055797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 547 - 881
Target Start/End: Complemental strand, 29056689 - 29056352
Alignment:
| Q |
547 |
gattcatgcttatggtaaatgtaaatgcgttgagggtgcacgccgtgtttttgatgatctggttgttagagatgtggttactt----ggaactcgttgtc |
642 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||| | | |||||||| |
|
|
| T |
29056689 |
gattcatacttatggtaaatgtaaatgcgttgagggtggcagatttgtttttgatgatttgcttgttagagatgtggttacttacttgcacctcgttgtt |
29056590 |
T |
|
| Q |
643 |
cgcatgttatatggattgtggatttccaaagcaaggtcttaatgtttttcgtgaaatgggatggaatggggtgaaaccggatccagtgtctgtgtctagc |
742 |
Q |
| |
|
| |||| ||| | ||||||||||||| || | ||| | ||| | || | ||||||| |||||| | ||||||||||||| ||| |||||||||| |
|
|
| T |
29056589 |
ctcatgctatgtcaattgtggatttccccagaagggt-tgaattctatt--ttaaatggggtggaatagagtgaaaccggatcatgtgattgtgtctagc |
29056493 |
T |
|
| Q |
743 |
attttgcgtgcgtgctcaaaattgcgagatttgaaatcaggtaaagaaatccatggatttgcagtgagacatggt--atggtagaaaaattgtctgtttg |
840 |
Q |
| |
|
|| ||| || |||||| | ||| ||||||| |||||||||| ||| ||| |||||| ||||||||||| ||||||||||| ||| ||||| |
|
|
| T |
29056492 |
atcatgcctgggtgctcggatttgaaagatttgcaatcaggtaagacaattcattgatttgtggtgagacatgggggatggtagaaaatgtgtttgttta |
29056393 |
T |
|
| Q |
841 |
caatgcccttttgaacatgtatgcaaaatgtctatgtgtaa |
881 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
29056392 |
caattcccttgtgaacttgtatgcaaaatgtctctgtgtaa |
29056352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 539 - 786
Target Start/End: Original strand, 29503991 - 29504238
Alignment:
| Q |
539 |
aatgcattgattcatgcttatggtaaatgtaaatgcgttgagggtgcacgccgtgtttttgatgatctggttgttagagatgtggttacttggaactcgt |
638 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| ||||||||| | | ||||||||||||||| ||||||||||||| ||||||||||| | | | | |
|
|
| T |
29503991 |
aatgcactgattcatgcctatggtaaatgtaaatttgttgagggtacgagacgtgtttttgatgatttggttgttagagacgtggttacttgaagcgcat |
29504090 |
T |
|
| Q |
639 |
tgtccgcatgttatatggattgtggatttccaaagcaaggtcttaatgtttttcgtgaaatgggatggaatggggtgaaaccggatccagtgtctgtgtc |
738 |
Q |
| |
|
||||| |||| ||| | ||||||||||| | | | ||| ||| ||| |||||||||||||||||||||||| |||| | || ||||||| |
|
|
| T |
29504091 |
tgtcctcatgctatgttagctgtggatttccctgggaggctctggccatttctcgcaaaatgggatggaatggggtgaaactggattcgatgactgtgtc |
29504190 |
T |
|
| Q |
739 |
tagcattttgcgtgcgtgctcaaaattgcgagatttgaaatcaggtaa |
786 |
Q |
| |
|
||| ||||||| ||||||||| | ||| ||||||| |||||||||| |
|
|
| T |
29504191 |
tagtattttgcctgcgtgctcggatttgaaagatttgcaatcaggtaa |
29504238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 796 - 881
Target Start/End: Complemental strand, 29056173 - 29056088
Alignment:
| Q |
796 |
tggatttgcagtgagacatggtatggtagaaaaattgtctgtttgcaatgcccttttgaacatgtatgcaaaatgtctatgtgtaa |
881 |
Q |
| |
|
||||||| | ||||||||||||||||||||| | |||| |||||||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
29056173 |
tggatttactgtgagacatggtatggtagaagatttgtttgtttgcaatgcccttgtgaacttgtatgcaaaatgtctacgtgtaa |
29056088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 354 - 887
Target Start/End: Complemental strand, 13795077 - 13794544
Alignment:
| Q |
354 |
ctcatggtcttccaaatgaagccattaacgtatatacttcgttgcgggcacgtgggatcaaacccaacatacctgtgtttatggctgtagccaaggcttg |
453 |
Q |
| |
|
||||||||||||||||||| |||||||| | |||||||| | |||||||||||||||||||||| ||| ||||||||| ||||| || ||||||||||| |
|
|
| T |
13795077 |
ctcatggtcttccaaatgaggccattaagatctatacttcatcgcgggcacgtgggatcaaacccgacaaacctgtgttcatggccgttgccaaggcttg |
13794978 |
T |
|
| Q |
454 |
tgctgcttctcgtgatgctttgaaagtcaaggaacttcacaatgatgcaactcggtgtggggcgatgtttaatgnnnnnnnnggcaatgcattgattcat |
553 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| || ||||| |||||||||| |||||||||| ||||| | ||| ||||||||||| |||||| |
|
|
| T |
13794977 |
tgctgcttctcgcgatgccttgaaagtcaaacaatttcacgatgatgcaacgcggtgtggggtgatgtctgatgtttccattggcaatgcattcattcat |
13794878 |
T |
|
| Q |
554 |
gcttatggtaaatgtaaatgcgttgagggtgcacgccgtgtttttgatgatctggttgttagagatgtggttacttggaactcgttgtccgcatgttata |
653 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| | ||||||||||||||| |||||| ||||||||||||||||||||| || |||||||| || ||| |
|
|
| T |
13794877 |
gcctatggtaaatgtaaatgtgttgagggtgcgagacgtgtttttgatgatttggttgctagagatgtggttacttggaattcattgtccgcctgctatg |
13794778 |
T |
|
| Q |
654 |
tggattgtggatttccaaagcaaggtcttaatgtttttcgtgaaatgggatggaatggggtgaaaccggatccagtgtctgtgtctagcattttgcgtgc |
753 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||| ||||||||| |||| ||||||| || |||| || |||||||||| ||||||| | |
|
|
| T |
13794777 |
ttaattgtggatttcctcagcaaggtcttaatgtttttcgcaaaatgggattgaataaggtgaaagcgaatccgttgactgtgtctagtattttgccagg |
13794678 |
T |
|
| Q |
754 |
gtgctcaaaattgcgagatttgaaatcaggtaaagaaatccatggatttgcagtgagacatggtatggtagaaaaattgtctgtttgcaatgcccttttg |
853 |
Q |
| |
|
||||||| | || | |||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| | ||| ||||| | |||| || || |
|
|
| T |
13794677 |
gtgctcagatttacaagatttgaaatcaggtaaagaaattcatggatttgtggtgaggcatggtatggtagaagatgtgtttgtttctagtgcctttgtg |
13794578 |
T |
|
| Q |
854 |
aacatgtatgcaaaatgtctatgtgtaagcgaag |
887 |
Q |
| |
|
||| | ||||||||||||||||||||||| |||| |
|
|
| T |
13794577 |
aacttctatgcaaaatgtctatgtgtaagagaag |
13794544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 184 - 887
Target Start/End: Original strand, 28741904 - 28742607
Alignment:
| Q |
184 |
tgaagcaatggtgtctccatctctctctaccaacctcccttctcaccttagtcttaaactcctcaaggaagctttggacgtgcgaaatttcaagcgtgcc |
283 |
Q |
| |
|
|||||||||||| |||| |||||| | |||||| |||||||||||||| |||| | ||| ||| || ||| || | || | ||||||| |||||| |
|
|
| T |
28741904 |
tgaagcaatggtacctccctctctccccaccaacatcccttctcaccttggtctcaggctcatcagggtagccttaaatgtaggcgatttcaaccgtgcc |
28742003 |
T |
|
| Q |
284 |
cgccaactgtttgataatattcctcaaccagactcaactacttcttcaactataatttcagctttaaccactcatggtcttccaaatgaagccattaacg |
383 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||||||| ||||||| | ||||||||||||||||||||||| ||| ||||||| ||||| || |
|
|
| T |
28742004 |
cgccaactgttcgataatattcctcaaccagaccccactacttgttcaactcttatttcagctttaaccactcatggactttcaaatgaggccataaaga |
28742103 |
T |
|
| Q |
384 |
tatatacttcgttgcgggcacgtgggatcaaacccaacatacctgtgtttatggctgtagccaaggcttgtgctgcttctcgtgatgctttgaaagtcaa |
483 |
Q |
| |
|
| ||| ||||||||| || |||||| || |||||| |||| ||||| || |||||| || || |||||||||| ||| ||||||| |||| |||||| |
|
|
| T |
28742104 |
tctattcttcgttgcaggaacgtggcattaaacccgacatgcctgttttcttggctgctgctaaagcttgtgctgtttccggtgatgccttgagagtcaa |
28742203 |
T |
|
| Q |
484 |
ggaacttcacaatgatgcaactcggtgtggggcgatgtttaatgnnnnnnnnggcaatgcattgattcatgcttatggtaaatgtaaatgcgttgagggt |
583 |
Q |
| |
|
|||| |||| ||||||| || |||||||||| ||||| | ||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28742204 |
ggaagttcatgatgatgcgacacggtgtggggtgatgtctgatgtttttgttggcaatgcgttgattcatgcttatggtaaatgtaaatgtgttgagggt |
28742303 |
T |
|
| Q |
584 |
gcacgccgtgtttttgatgatctggttgttagagatgtggttacttggaactcgttgtccgcatgttatatggattgtggatttccaaagcaaggtctta |
683 |
Q |
| |
|
|| | ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| | |||||| | | ||||||||||| | | || | |
|
|
| T |
28742304 |
gcgagacgtgtttttgatgatttggttgttagagatgtggttagttggacctcgttgtcgtcgtgttatgttaagtgtggatttcctcggaagggcatgg |
28742403 |
T |
|
| Q |
684 |
atgtttttcgtgaaatgggatggaatggggtgaaaccggatccagtgtctgtgtctagcattttgcgtgcgtgctcaaaattgcgagatttgaaatcagg |
783 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| ||| |||| || |||| ||||||||||||| ||| || | ||||| |||||||||||| || |
|
|
| T |
28742404 |
atgtttttcgtgaaatggggtggagtggggtgaagccgaatccgatgactgtttctagcattttgcctgcttgtgcggaattgaaagatttgaaatcggg |
28742503 |
T |
|
| Q |
784 |
taaagaaatccatggatttgcagtgagacatggtatggtagaaaaattgtctgtttgcaatgcccttttgaacatgtatgcaaaatgtctatgtgtaagc |
883 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| | ||| |||| |||||||| ||| ||| ||| | |||||||||||||| || ||||||| |
|
|
| T |
28742504 |
taaagaaattcatgggtttgcagtgagacatgggatggtggtaaatttgtttgtttgcagtgcacttgtgagcttgtatgcaaaatgtttaagtgtaaga |
28742603 |
T |
|
| Q |
884 |
gaag |
887 |
Q |
| |
|
|||| |
|
|
| T |
28742604 |
gaag |
28742607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 613 - 887
Target Start/End: Complemental strand, 13794515 - 13794241
Alignment:
| Q |
613 |
tagagatgtggttacttggaactcgttgtccgcatgttatatggattgtggatttccaaagcaaggtcttaatgtttttcgtgaaatgggatggaatggg |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || ||| | ||||||||||||| || | ||||| ||||||||||| ||||||| || | ||||| |
|
|
| T |
13794515 |
tagagatgtggttacttggaactcgttgtcctcgtgctatgtcaattgtggatttcctcagaagggtctgaatgtttttcgcgaaatggtattggatggg |
13794416 |
T |
|
| Q |
713 |
gtgaaaccggatccagtgtctgtgtctagcattttgcgtgcgtgctcaaaattgcgagatttgaaatcaggtaaagaaatccatggatttgcagtgagac |
812 |
Q |
| |
|
||||| |||||||| ||| |||||||| |||||||| |||||||||| | |||| ||||||||||||||||||| ||| |||||||||||| ||| || |
|
|
| T |
13794415 |
gtgaagccggatccggtgactgtgtcttgcattttgtctgcgtgctcagatttgcaggatttgaaatcaggtaaagcaattcatggatttgcattgaaac |
13794316 |
T |
|
| Q |
813 |
atggtatggtagaaaaattgtctgtttgcaatgcccttttgaacatgtatgcaaaatgtctatgtgtaagcgaag |
887 |
Q |
| |
|
|||| ||||||||||| ||| ||||| ||||||||| ||||| |||||| || |||||||||||||| |||| |
|
|
| T |
13794315 |
atggaatggtagaaaatgtgtttgtttctaatgcccttgtgaacttgtatgaaagctgtctatgtgtaagagaag |
13794241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 626 - 887
Target Start/End: Complemental strand, 13794199 - 13793938
Alignment:
| Q |
626 |
acttggaactcgttgtccgcatgttatatggattgtggatttccaaagcaaggtcttaatgtttttcgtgaaatgggatggaatggggtgaaaccggatc |
725 |
Q |
| |
|
||||||||||||||| || |||| ||| | ||||||||||||| || | ||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13794199 |
acttggaactcgttggcctcatgctatgtcaattgtggatttcctcagaagggtctaaatgtttttcgtgaaatgggactgaatggggtgaaaccggatc |
13794100 |
T |
|
| Q |
726 |
cagtgtctgtgtctagcattttgcgtgcgtgctcaaaattgcgagatttgaaatcaggtaaagaaatccatggatttgcagtgagacatggtatggtaga |
825 |
Q |
| |
|
| || || |||| ||||| |||| ||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
13794099 |
ctatggctatgtccagcatcttgcccgcgtgctcacaattgaaagatttgaaatcaggtaaaacaattcatggatttgcagtgaaacatggaatggtaga |
13794000 |
T |
|
| Q |
826 |
aaaattgtctgtttgcaatgcccttttgaacatgtatgcaaaatgtctatgtgtaagcgaag |
887 |
Q |
| |
|
| | ||| |||||||| ||||||| ||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
13793999 |
agatgtgtttgtttgcactgcccttgtgaacttgtatgcaaactgtctatgtgtaagagaag |
13793938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 613 - 880
Target Start/End: Complemental strand, 13793909 - 13793642
Alignment:
| Q |
613 |
tagagatgtggttacttggaactcgttgtccgcatgttatatggattgtggatttccaaagcaaggtcttaatgtttttcgtgaaatgggatggaatggg |
712 |
Q |
| |
|
|||| ||||||| || ||||||||||||||| | || ||| | ||||||||||||| || | ||||| ||||||||||| ||||||| || ||||||| |
|
|
| T |
13793909 |
tagaaatgtggtaacctggaactcgttgtcctcgtgctatgtcaattgtggatttcctcagaagggtctgaatgtttttcgcgaaatggtattgaatggg |
13793810 |
T |
|
| Q |
713 |
gtgaaaccggatccagtgtctgtgtctagcattttgcgtgcgtgctcaaaattgcgagatttgaaatcaggtaaagaaatccatggatttgcagtgagac |
812 |
Q |
| |
|
|| |||||||||| ||| || || ||| ||||||| ||| |||||| | |||| |||||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
13793809 |
gttaaaccggatctggtgactatgcttagtattttgcatgcatgctcagatttgcaagatttgaaatcaggtaaagtaattcatggatttgcggtgagac |
13793710 |
T |
|
| Q |
813 |
atggtatggtagaaaaattgtctgtttgcaatgcccttttgaacatgtatgcaaaatgtctatgtgta |
880 |
Q |
| |
|
|||| ||||||||| | ||| ||||||||| ||||| |||| | |||||||||||||| | |||||| |
|
|
| T |
13793709 |
atgggatggtagaagatgtgtttgtttgcaacgccctgttgagcttgtatgcaaaatgtgtttgtgta |
13793642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 32204090 - 32204049
Alignment:
| Q |
63 |
gtgggttttgcacgatagatgattcgcaaaacacagcatttt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32204090 |
gtgggttttgcacgatagatgattcgcaccacacagcatttt |
32204049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 38976796 - 38976751
Alignment:
| Q |
63 |
gtgggttttgcacgatagatgattcgcaaaacacagcatttttcat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
38976796 |
gtgggttttgcacgatagatgattcgcaccacacaacatttttcat |
38976751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 49907325 - 49907368
Alignment:
| Q |
63 |
gtgggttttgcacgatagatgattcgcaaaacacagcatttttc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
49907325 |
gtgggttttgcacgatagatgattcgcaccacagagcatttttc |
49907368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University