View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2715_high_2 (Length: 881)

Name: NF2715_high_2
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2715_high_2
NF2715_high_2
[»] chr5 (3 HSPs)
chr5 (15-737)||(41140509-41141233)
chr5 (732-863)||(41141265-41141396)
chr5 (403-461)||(12914332-12914390)
[»] chr8 (7 HSPs)
chr8 (18-164)||(35907290-35907435)
chr8 (230-319)||(35907593-35907688)
chr8 (221-318)||(35915196-35915298)
chr8 (402-461)||(40395940-40395999)
chr8 (401-462)||(404026-404087)
chr8 (83-144)||(35914992-35915052)
chr8 (407-453)||(6048665-6048711)
[»] chr4 (4 HSPs)
chr4 (18-164)||(33910683-33910828)
chr4 (230-319)||(33910986-33911081)
chr4 (403-446)||(42508022-42508065)
chr4 (408-453)||(13293363-13293408)
[»] chr1 (2 HSPs)
chr1 (408-444)||(11022617-11022653)
chr1 (414-451)||(7026516-7026553)
[»] chr3 (1 HSPs)
chr3 (407-453)||(12764465-12764511)


Alignment Details
Target: chr5 (Bit Score: 640; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 15 - 737
Target Start/End: Original strand, 41140509 - 41141233
Alignment:
Q  15 agcaaaggtagcggtgaaatgttggctcatgttgataaaggggtttatggggaatttgagcaacttacttgaaggagctgcaactgatgcaggagctgga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  41140509 agcaaaggtagcggtgaaatgttggctcatgttgataaaggggtttatggggaatttgagcaacttacttgaaggagttgcaactgatgcaggagatgga 41140608  T
Q  115 catagcttggatgacaaggttagtgtatgcagtgaagatcaaaattcagatgaagagctaaagtagataactttagaagttaaggttcaagtaattcgtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41140609 catagcttggatgacaaggttagtgtatgcagtgaagatcaaaattcagatgaagagctaaagtagataactttagaagttaaggttcaagtaattcgtt 41140708  T
Q  215 taataag-aagaacttgagacctgtgttgtaatagattcttctgctcaagatgagtgtgtcaatggagataatagaagattggaagctaaaattaatgaa 313  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41140709 taataaggaagaacttgagacctgtgttgtaatagattcttctgctcaagatgagtgtgtcaatggagataatagaagattggaagctaaaactaatgaa 41140808  T
Q  314 tcagggttgacatttaaagtatcgatttgtattggacttcaatgattagatgattagcaattaggttctattaattgtgtgcttccaaagaggcattctt 413  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41140809 tcagagttgacatttaaagtatctatttgtattggacttcaatgattagatgattagcaattaggttctattaattgtgtgcttccaaagaggcattctt 41140908  T
Q  414 ttatagtcacaaacataaatgaacagtgtttggtcacacatataaaaaggcttttcctcaaaatgagagagaaagagtagattctgttgaaattgtaacc 513  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41140909 ttatagtcacaaacataaatgaacagtgtttggtcaaacatataaaaaggcttttcctcaaaatgagagagaaagagtagattatgttgaaattgtaacc 41141008  T
Q  514 ataaaacaccattgttgattaagatgagaaattactcgaaccttttattgattacagagagagttcaagacaatctatcaagttaactctttacagatgg 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  41141009 ataaaacaccattgttgattaagatgagaaattactcgaaccttttattgattacagagagaggtcaagacaatctatcaagttaactttttacagatgg 41141108  T
Q  614 gtatggaagagtaatttatacttgatctaataagctaatctcagacttatatatagttcttcgccctacatttt-nnnnnnnttacaaatatttttggaa 712  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||        ||||||||||||||||||    
T  41141109 gtatggaagagtaatttatatttgatctaataagctaatctcagacttatatatagttctccaccctacattttaaaaaaaattacaaatatttttggaa 41141208  T
Q  713 gtgtatgtttagactttagatagta 737  Q
    |||||||||||||||||||||||||    
T  41141209 gtgtatgtttagactttagatagta 41141233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 732 - 863
Target Start/End: Original strand, 41141265 - 41141396
Alignment:
Q  732 atagtactaaatttacatttttgaatgtctacatctgaaattatgctgagagtgcggcagtggggaaatttgtgataacaaataacagtaaagcgtgtaa 831  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41141265 atagtactaaatttacatttttgaatgtctacatctgaaattatgctgagagtgcggcagtggggaaatttgtgataacaaataacagtaaagcgtgtaa 41141364  T
Q  832 ttacaaattttgaccattgaatcacaactaac 863  Q
    ||||||||||||||||||||||||||||||||    
T  41141365 ttacaaattttgaccattgaatcacaactaac 41141396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 12914390 - 12914332
Alignment:
Q  403 gaggcattcttttatagtcacaaacataaatgaacagtgtttggtcacacatataaaaa 461  Q
    |||| ||||||| ||||| ||||| |||||| || |||||||| |||||||||||||||    
T  12914390 gaggtattctttcatagttacaaatataaataaatagtgtttgatcacacatataaaaa 12914332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 35907290 - 35907435
Alignment:
Q  18 aaaggtagcggtgaaatgttggctcatgttgataaaggggtttatggggaatttgagcaacttacttgaaggagctgcaactgatgcaggagctggacat 117  Q
    |||||||| ||||||||||||| ||||||||||||||||||| ||  | |||||||  || ||  ||||||| | |||||||||||||||||||||||||    
T  35907290 aaaggtagtggtgaaatgttggatcatgttgataaaggggttgataag-aatttgattaatttggttgaaggcgttgcaactgatgcaggagctggacat 35907388  T
Q  118 agcttggatgacaaggttagtgtatgcagtgaagatcaaaattcaga 164  Q
    || |||| || || ||||||||||||| |||||||||  ||||||||    
T  35907389 agtttgggtgtcagggttagtgtatgcggtgaagatcggaattcaga 35907435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 35907593 - 35907688
Alignment:
Q  230 gagacctgtgttgtaatagattcttctgctcaagatga--gtgt----gtcaatggagataatagaagattggaagctaaaattaatgaatcaggg 319  Q
    |||||||||||||||||||||||||||||||||| |||  ||||    ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  35907593 gagacctgtgttgtaatagattcttctgctcaagttgaacgtgtcactgtcaatggagataatagaaaattggaagctaaaactaatgaatcaggg 35907688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 35915196 - 35915298
Alignment:
Q  221 gaagaacttgagacctgtgttgtaatagattcttctgctcaagatgagtgtgt--caatgg---agataatagaagattggaagctaaaattaatgaatc 315  Q
    |||| |||||||||||||| | ||||||||||| ||||||| | ||||||| |  ||||||   ||||||||||| |||||||||||||| ||||||| |    
T  35915196 gaagcacttgagacctgtgatataatagattctcctgctcaggttgagtgtttggcaatggtggagataatagaaaattggaagctaaaactaatgaacc 35915295  T
Q  316 agg 318  Q
    |||    
T  35915296 agg 35915298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 402 - 461
Target Start/End: Complemental strand, 40395999 - 40395940
Alignment:
Q  402 agaggcattcttttatagtcacaaacataaatgaacagtgtttggtcacacatataaaaa 461  Q
    ||||||||||||  || | |||||||||||||||| ||||||| ||||||||||||||||    
T  40395999 agaggcattcttgcatggacacaaacataaatgaatagtgttttgtcacacatataaaaa 40395940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 462
Target Start/End: Complemental strand, 404087 - 404026
Alignment:
Q  401 aagaggcattcttttatagtcacaaacataaatgaacagtgtttggtcacacatataaaaag 462  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||  |||||| || |||||    
T  404087 aagaggaattcttttacagtcacaaacataaatgaatagtgtttgagcacacacattaaaag 404026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 35914992 - 35915052
Alignment:
Q  83 ttgaaggagctgcaactgatgcaggagctggacatagcttggatgacaaggttagtgtatgc 144  Q
    ||||||||| |||||||||||||||||||||| ||||| ||| | | |||||||||||||||    
T  35914992 ttgaaggagttgcaactgatgcaggagctggatatagc-tgggttataaggttagtgtatgc 35915052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 407 - 453
Target Start/End: Complemental strand, 6048711 - 6048665
Alignment:
Q  407 cattcttttatagtcacaaacataaatgaacagtgtttggtcacaca 453  Q
    ||||||| ||| |||||||||| ||||||| ||||||||||||||||    
T  6048711 cattcttctatggtcacaaacacaaatgaatagtgtttggtcacaca 6048665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 33910683 - 33910828
Alignment:
Q  18 aaaggtagcggtgaaatgttggctcatgttgataaaggggtttatggggaatttgagcaacttacttgaaggagctgcaactgatgcaggagctggacat 117  Q
    |||||||| ||||||||||||| ||||||||||||||||||| ||  | |||||||  || ||  ||||||| | |||||||||||||||||||||||||    
T  33910683 aaaggtagtggtgaaatgttggatcatgttgataaaggggttgataag-aatttgattaatttggttgaaggcgttgcaactgatgcaggagctggacat 33910781  T
Q  118 agcttggatgacaaggttagtgtatgcagtgaagatcaaaattcaga 164  Q
    || |||| || || ||||||| |||||||||||||||  ||||||||    
T  33910782 agtttgggtgtcagggttagtatatgcagtgaagatcggaattcaga 33910828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 33910986 - 33911081
Alignment:
Q  230 gagacctgtgttgtaatagattcttctgctcaagatga--gtgt----gtcaatggagataatagaagattggaagctaaaattaatgaatcaggg 319  Q
    ||||||||| |||||||||||||||||||||||| |||  ||||    ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  33910986 gagacctgtattgtaatagattcttctgctcaagttgaacgtgtcactgtcaatggagataatagaaaattggaagctaaaactaatgaatcaggg 33911081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 42508065 - 42508022
Alignment:
Q  403 gaggcattcttttatagtcacaaacataaatgaacagtgtttgg 446  Q
    |||| |||||||||||||||| ||||||||||||||||||||||    
T  42508065 gaggaattcttttatagtcactaacataaatgaacagtgtttgg 42508022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 13293408 - 13293363
Alignment:
Q  408 attcttttatagtcacaaacataaatgaacagtgtttggtcacaca 453  Q
    |||| ||||||||||||| |||||||||| ||||||||| ||||||    
T  13293408 attcatttatagtcacaagcataaatgaatagtgtttgggcacaca 13293363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 444
Target Start/End: Original strand, 11022617 - 11022653
Alignment:
Q  408 attcttttatagtcacaaacataaatgaacagtgttt 444  Q
    ||||||||||||||||||||||||||| |||||||||    
T  11022617 attcttttatagtcacaaacataaatgcacagtgttt 11022653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 7026516 - 7026553
Alignment:
Q  414 ttatagtcacaaacataaatgaacagtgtttggtcaca 451  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  7026516 ttatagtcacaaacataaatgaatagtgtttggacaca 7026553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 407 - 453
Target Start/End: Complemental strand, 12764511 - 12764465
Alignment:
Q  407 cattcttttatagtcacaaacataaatgaacagtgtttggtcacaca 453  Q
    |||||||  ||||||||||||||||||||| ||| ||||||||||||    
T  12764511 cattcttgcatagtcacaaacataaatgaaaagtatttggtcacaca 12764465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University