View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2715_high_23 (Length: 298)
Name: NF2715_high_23
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 37008373 - 37008099
Alignment:
| Q |
8 |
ttctcaatcacattctttcaatctacaagactcaaactcaagattttgtttaaaggatctccaactcagtgcagttctactcagaccaatataatgttgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
37008373 |
ttctcaatcacattctttcaatctacaagactcaaactcaagattttgcttaaaggatctccgactcaatgcagttctactcggaccaatataatgttgg |
37008274 |
T |
|
| Q |
108 |
gaaagnnnnnnnnnnnnnnnntcatttcttgttttgtgtattgtagtacataggaagtggatttgctggacttcaagggattatatatgctggaacaaat |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37008273 |
gaaagaaaaataaacaaaaaatcatttcttgttttgtgtattgtagtacataggaagtggatttgctggacttcaagggattatatatgctggaacaaat |
37008174 |
T |
|
| Q |
208 |
tgctttcatagaagaaaagttatgtatggtctttctcctcctaatgaaattcaaaatgcaaagaagggtcaaggt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37008173 |
tgctttcatagaagaaaagttatgtatggtctttctcctcctaatgaaattcaaaatgcaaagaagggtcaaggt |
37008099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 37025543 - 37025463
Alignment:
| Q |
166 |
ggatttgctggacttcaagggattatatatgctggaacaaattgctttcatagaagaaaagttatgtatggtctttctcct |
246 |
Q |
| |
|
||||||| |||||||||||||| |||| || |||||||||||||| |||||||||||||| || ||||| ||||||||| |
|
|
| T |
37025543 |
ggatttggaggacttcaagggatgctatacgcaggaacaaattgcttccatagaagaaaagtaatttatggcctttctcct |
37025463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University