View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2715_high_3 (Length: 772)
Name: NF2715_high_3
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 217 - 754
Target Start/End: Complemental strand, 32467504 - 32466967
Alignment:
| Q |
217 |
taagagttgaaagtaagtcacgagcttctccaacatgtacatcataaatggagaaaatcattatgttgtgaaaggaggaaaaagaagtataatattacag |
316 |
Q |
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| T |
32467504 |
taagagttgaaagtaagccacgagcttctccaacatgtacatcataaatggagaaaatcattatgttgtgaaaggaggaaaaagaagtataatattacag |
32467405 |
T |
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| Q |
317 |
tttacccttcctggtgatggcttactccaactgacaacatgtcttccatcgaccatcatgagcattatcgttcaacaacataagattgagcagcaatcac |
416 |
Q |
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| T |
32467404 |
tttacccttcctgatgatggcttactccatctgacaacatgtcttccatcgaccatcatgagcattatcgttcaacaacataagattgagcagcaatcac |
32467305 |
T |
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| Q |
417 |
agtattccatactatgttattcctttgcttccataaagtccatgcaaacagtgtagcttcttcaacaattatattttacgaaatatgaaagataatacct |
516 |
Q |
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| T |
32467304 |
agtattccatactatgttattcctttgcttccataaagtccatgcaagcagtgtagcttcatcaacaattatattttacgaaatatgaaagataatacct |
32467205 |
T |
|
| Q |
517 |
gacacattcagactttgattcacgattgtattcataatagttgaaagagatcaaatttaccaaacataagagctattggaacatttnnnnnnncacatga |
616 |
Q |
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| T |
32467204 |
gacacattcagactttgattcacgattgtattcataatagttgaaagagagcaaatttaccaaacattagagctattggaacatttaaaaaaacacatga |
32467105 |
T |
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| Q |
617 |
agactctcctcattataaaacacatgaagactatccccatcattatcatcacataagacacaatttatcttaaagaaccaaattatatagagattaacaa |
716 |
Q |
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| T |
32467104 |
agactctcctcattataaaacacatgaagactatccccatcattatcatcacataagacacaatttatcttaaagaaccaaattatatagagattaacaa |
32467005 |
T |
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| Q |
717 |
ttttagacataaccttataaaaaacgagacaataatag |
754 |
Q |
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| T |
32467004 |
ttttagacataaccttataaaaaacgagacaataatag |
32466967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 32467708 - 32467617
Alignment:
| Q |
9 |
acatcatcaaaaatataaatgctatggtgagataaggaaactttaactattaaactatcttatttgtttgtcctctaacacaagcataacct |
100 |
Q |
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| T |
32467708 |
acatcataaaaaatataaatgctatggtgagataaggaaactttaactattaaactatcttatttgtttgtcctctaacacaagcataacct |
32467617 |
T |
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