View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2715_high_7 (Length: 560)
Name: NF2715_high_7
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 4498633 - 4498925
Alignment:
| Q |
1 |
accaaacttaaacaagttttggagggtggaaattccgatgcaggtttcttcaacacattagatttctacataggaatgggagttggatttgcagcagggt |
100 |
Q |
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| T |
4498633 |
accaaacttaaacaagttttggagggtggaaattccgatgcaggtttcttcaacacatcagatttctacataggaatgggagttggatttgcagcagggt |
4498732 |
T |
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| Q |
101 |
tttggggggtttgcattgctattttctttatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgatacctttgt |
200 |
Q |
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| T |
4498733 |
tttggggggtttgcattgctactttcttgatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgatacctttgt |
4498832 |
T |
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| Q |
201 |
ctttatctgtcaagagggacgaaaatgtgggaattggaccatcccgctgctaggagtctggtcgatattgaagttgtattgaagtctcgtatt |
293 |
Q |
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| T |
4498833 |
ctttatctgtcaagagggatgaaaatgtgggaattggaccataccgccgctaggagtctggtcgatattgaagttgtattgaagtctcgtatt |
4498925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 4329267 - 4329074
Alignment:
| Q |
10 |
aaacaagttttggagggtggaaattccgatgcaggtttcttcaacacattagatttctacataggaatgggagttggatttgcagcagggttttgggggg |
109 |
Q |
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| T |
4329267 |
aaacaagttttggagcgtggaaattctgatgctggtttcgttgacacatcagatttctacgtaggaatgggagttggatttgcagcagggttttgggggg |
4329168 |
T |
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| Q |
110 |
tttgcattgctattttctttatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgatacctttgtctt |
203 |
Q |
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| T |
4329167 |
tttgcattgctattttctttaacagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgtttatgagacctttgtctt |
4329074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 4329036 - 4328946
Alignment:
| Q |
207 |
ctgtcaagagggacgaaaatgtgggaattggaccatcccgctg----ctaggagtctggtcgatattgaagttgtattgaagtctcgtatt |
293 |
Q |
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| T |
4329036 |
ctgtcaagagggatgaaaatgtggaaattggaccataccgcacgccactaggagtctggtcgatattgaagttgcattgaagtctcatatt |
4328946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 4499146 - 4499204
Alignment:
| Q |
367 |
gagggaataacaatcaaagcataaatactc--atagaagaaccgcaataaagtgagcat |
423 |
Q |
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| T |
4499146 |
gagggaataacaatcaaaacagaaatactcagatagacgaaccgcaataaagtgagcat |
4499204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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