View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2715_low_10 (Length: 493)
Name: NF2715_low_10
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 108 - 483
Target Start/End: Original strand, 48389576 - 48389954
Alignment:
| Q |
108 |
ttttgaaattatgaataaacataaactaaaataacaagtnnnnnnnnnnn-ggccaagatgcatacttgtcatcattgatgacaaggtcgagcttcttgt |
206 |
Q |
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| T |
48389576 |
ttttgaaattttgaataaacataaactaaaataacaagtaaagaaaaaaaagggcaagatgcatacttgtcatcattgatgacaaggtcgagcttcttgt |
48389675 |
T |
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| Q |
207 |
gagcaaaggcctccctgttagtaatcaagtattttttgcagaaatctaccacctcctgtttggttcatagttaatttgagtatcaaactatatcaatctt |
306 |
Q |
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| T |
48389676 |
gagcaaaggcctccctgttagtaatcaagtattttttgcagaaatctaccacctcctgtttggttcatagttaatttgagtatcaaactatatcaatctt |
48389775 |
T |
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| Q |
307 |
aatatcatataatattgttgttatactaatactagtactatcattatcattattaatgggtttggcaataacctggtctatatcacacatgatga--ctc |
404 |
Q |
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| T |
48389776 |
aatatcatataatattgttgttatactaatactagtactatcattatcattattaatgggtttggcaataacctggtctatatcacacatgatgactctc |
48389875 |
T |
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| Q |
405 |
tctctattgacttatgctatgcttgagggactccctagtagcagacccttcacctcctcccattataaacactcctttg |
483 |
Q |
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| T |
48389876 |
tctctattgacttatgctatgcttgagggactccctagtagcagacccttcacctcctcccattataaacactcttttg |
48389954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 48389310 - 48389399
Alignment:
| Q |
17 |
acgattttgtataaagttgataacaaggtccaccttcaactgggtctgccaaatctccagcaatgatatcaaatttctctttccttttct |
106 |
Q |
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| T |
48389310 |
acgattttgtataaagttgataacaaggtccaccttcaactgggtctgccaaatctccaacaatgatatcaaatttctctttccttttct |
48389399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 265
Target Start/End: Original strand, 3766993 - 3767077
Alignment:
| Q |
181 |
attgatgacaaggtcgagcttcttgtgagcaaaggcctccctgttagtaatcaagtattttttgcagaaatctaccacctcctgt |
265 |
Q |
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| T |
3766993 |
attgatgacaaggtcgagcttcttgtcagcaaatgcctccttatttgcaaccaggtattttctgcagaaatccaccacctcctgt |
3767077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 3766804 - 3766876
Alignment:
| Q |
34 |
tgataacaaggtccaccttcaactgggtctgccaaatctccagcaatgatatcaaatttctctttccttttct |
106 |
Q |
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| T |
3766804 |
tgatagcaaggaccatcttcaagtgggtcagccaaatctccaacaatgatatcaaacttctcctttcttttct |
3766876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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