View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2715_low_11 (Length: 486)
Name: NF2715_low_11
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 28988391 - 28987924
Alignment:
| Q |
1 |
cgaaatttcaataaagctccaaaataaaaaaggaagataagaataaaggagcatatacatatatgtgatgtaattattcattagttatatatatcaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28988391 |
cgaaatttcaataaagctccaaaataaaaaaggaagataagaataaaggagcatatacatatatgtgatgtaattattcattagttatatatatcaagag |
28988292 |
T |
|
| Q |
101 |
aggtcaagacaaaagtaaaatagagtcatgaatttgatacaattgtatgcataaggttagattaaaatcacttatctcaatttaacgtccggcagtcgga |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28988291 |
aggtcaagacaaaagtaaaatagggtcatgaatttgatacaattgtatgtataaggttagattaaaatcacttatctcaatttaacgtccggcagtcgaa |
28988192 |
T |
|
| Q |
201 |
tgtaccataaagttgagtggatcgaaatgatccactcaaaattacttagctgcatgaacaagaggattttcattgacataattacccgctggattatact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28988191 |
tgtaccataaagttgagtggatcgaaatgatccactcaaaattacttagctgcatgaacaagaggattctcattgacataattacccgctggattatact |
28988092 |
T |
|
| Q |
301 |
cgcacgcgatgagcatgccagtaccgttgttcttgcaatgctgcaaggcacatccaacatgcgtcgaatccctccacacaatctgcgtaaaatgctcaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28988091 |
cgcacgcgatgagcatgccagtaccgttgttcttgcaatgttgcaaggcacatccaacatgcgtcgaatccctccacacaatctgcgtaaaatgctcaca |
28987992 |
T |
|
| Q |
401 |
catctttggtggaggctcacacttaagggttttgaaactataccaagtcttctccttgtaccaataat |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28987991 |
catctttggtggaggctcacacttaagggtttcgaaactataccaagtcttctccttgtaccaataat |
28987924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University