View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2715_low_12 (Length: 483)
Name: NF2715_low_12
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 49671594 - 49671115
Alignment:
| Q |
1 |
tattttctttaaggccaggtttgacaagttaatctcacccttatgcctgttcatatcaactggaagcttagatgatattagctcaatgagcacaacacca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49671594 |
tattttctttaaggccaggtttgacaagttaatctcatccttatgcctcttcatatcaactggaagcttagatgatattagctcaatgaccacaacacca |
49671495 |
T |
|
| Q |
101 |
aaactatatacatcactcttgctagtgagctggtagcattgatgatattctggatcaacataacccggtgtcccttgtggcgccgtggatgcatgggtga |
200 |
Q |
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||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
49671494 |
aaactgtatacatcactcttgctagtaagctggtagcattggtgatattctggatcaacataacccggtgtcccttgtggtgccgtggaagcatgggtga |
49671395 |
T |
|
| Q |
201 |
tatcgagggggaatagccttgaaagaccaaaatctccaactttgacactgaagttatctgtgacgagaatgtttttggttttcacatcacggtggatgat |
300 |
Q |
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| T |
49671394 |
tatcgagggggaatagccttgaaagaccaaaatctccaactttgacactgaagttatctgtgaggagaatgtttttggtttttacgtcacggtggatgat |
49671295 |
T |
|
| Q |
301 |
gcctgaagcatgcagataagccaatgagcttgctgtctctatggcaattttcattctgatatgccagggcagtgtgcctggtcttgctagatcaccgtgg |
400 |
Q |
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| T |
49671294 |
gcctgaagcatgcagataagccaatgagcttgctgtctctatggcaattttcatcctgatatgccatggcagtgtgcctgatcttgctagattgccgtgg |
49671195 |
T |
|
| Q |
401 |
agatggcaatcaacactgtgatttgaaacatattcatacacgagcagtagttcattgctgtgatatgaagtacagccata |
480 |
Q |
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| T |
49671194 |
agatggcaatcaacagtgtgatttggaacatattcgtacacgagcagtagttcgttgctgtgatatgaagtactgccata |
49671115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 71 - 356
Target Start/End: Complemental strand, 49667552 - 49667267
Alignment:
| Q |
71 |
gatgatattagctcaatgagcacaacaccaaaactatatacatcactcttgctagtgagctggtagcattgatgatattctggatcaacataacccggtg |
170 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||| ||||| || || |||| ||||| |||| |
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| T |
49667552 |
gatgatattagttcaatgagcacaactccaaaactatatacatcactcttgctagtaagctgataaaattggtgatactcggggtcaaggtaacctggtg |
49667453 |
T |
|
| Q |
171 |
tcccttgtggcgccgtggatgcatgggtgatatcgagggggaatagccttgaaagaccaaaatctccaactttgacactgaagttatctgtgacg-agaa |
269 |
Q |
| |
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| |||||||| || ||||| |||| ||| ||| ||||||||| |||||||| ||||||||| ||||||| |||| || || | || | | || | |
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| T |
49667452 |
ttccttgtggagctgtggagacatgagtggcatcctcggggaatagtcttgaaaggccaaaatctgcaactttaacaccaaaatt-gccgtcaagaagta |
49667354 |
T |
|
| Q |
270 |
tgtttttggttttcacatcacggtggatgatgcctgaagcatgcagataagccaatgagcttgctgtctctatggcaattttcattc |
356 |
Q |
| |
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| T |
49667353 |
tgttgctggttttcacgtcacggtgaatgatcccagaagcatggagataagccaaggcattagcagtctctatggcaattttaattc |
49667267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 49675774 - 49675605
Alignment:
| Q |
20 |
tttgacaagttaatctcacccttatgcctgttcatatcaactggaagcttagatgatattagctcaatgagcacaacaccaaaactatatacatcactct |
119 |
Q |
| |
|
|||| |||||| |||||| |||||| ||| |||||||||||| || |||| ||||| ||||||| || ||||| ||||| || || |||||||||| |
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| T |
49675774 |
tttgccaagtttatctcatccttatctctgctcatatcaactgctggcatagacgatatcagctcaacaagtacaactccaaagctgtaaacatcactct |
49675675 |
T |
|
| Q |
120 |
tgctagtgagctggtagcattgatgatattctggatcaacataacccggtgtcccttgtggcgccgtgga |
189 |
Q |
| |
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|||| || ||| |||||||||||||||||| ||||| | ||| ||||| || |||||||| || ||||| |
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|
| T |
49675674 |
tgcttgtaagcctgtagcattgatgatattccggatccatatatcccggggttccttgtggagctgtgga |
49675605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 49692788 - 49692737
Alignment:
| Q |
69 |
tagatgatattagctcaatgagcacaacaccaaaactatatacatcactctt |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| |
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|
| T |
49692788 |
tagatgatattagctcgatgagcacaacgccaaagctatacacatcactctt |
49692737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 366
Target Start/End: Complemental strand, 49675529 - 49675428
Alignment:
| Q |
265 |
gagaatgtttttggttttcacatcacggtggatgatgcctgaagcatgcagataagccaatgagcttgctgtctctatggcaattttcattctgatatgc |
364 |
Q |
| |
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||||||||| || ||||||||||||||||| ||||| | |||||||| ||||||||||| | | || ||||||| ||||| |||||||| |||||| |
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| T |
49675529 |
gagaatgttgtttgttttcacatcacggtgaatgatttcagaagcatggagataagccaaagcagtagcagtctctaaggcaactttcattcgaatatgc |
49675430 |
T |
|
| Q |
365 |
ca |
366 |
Q |
| |
|
|| |
|
|
| T |
49675429 |
ca |
49675428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 49692591 - 49692531
Alignment:
| Q |
266 |
agaatgtttttggttttcacatcacggtggatgatgcctgaagcatgcagataagccaatg |
326 |
Q |
| |
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|||||||| ||||||| ||||||||||| |||||| | |||||||| ||||||||||||| |
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| T |
49692591 |
agaatgttggtggttttgacatcacggtgaatgatgtcggaagcatgtagataagccaatg |
49692531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 22783830 - 22783729
Alignment:
| Q |
70 |
agatgatattagctcaatgagcacaacaccaaaactatatacatcactcttgctagtgagctggtagcattgatgatattctggatcaacataacccggt |
169 |
Q |
| |
|
||||||||||||||||| || ||||| || || ||||||||||| |||||| | || |||||||||||| | ||||||||||||||||||| || ||| |
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| T |
22783830 |
agatgatattagctcaacaagaacaacgccgaagctatatacatcgctcttgtttgttagctggtagcataaacgatattctggatcaacatagcctggt |
22783731 |
T |
|
| Q |
170 |
gt |
171 |
Q |
| |
|
|| |
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|
| T |
22783730 |
gt |
22783729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 33644466 - 33644506
Alignment:
| Q |
143 |
tgatattctggatcaacataacccggtgtcccttgtggcgc |
183 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| ||||| |
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|
| T |
33644466 |
tgatattgtggatcaacataacccggagtcccttgaggcgc |
33644506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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