View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2715_low_17 (Length: 370)
Name: NF2715_low_17
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 33161570 - 33161229
Alignment:
| Q |
19 |
gaattttcgcgggaaaatcaatcaatggaagaagaaagctccgaattcatcgacatcaagctttcttctccggcgaagaagctcccactcgatcttcctc |
118 |
Q |
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| T |
33161570 |
gaattttcgcgggaaaatcaatcaatggaagaagaaagctccgaattcatcgacatcaagctttcttctccggcgaagaagctcccactcgatcttcctc |
33161471 |
T |
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| Q |
119 |
aagatccgcagctcaaatcctgccgccgtctccgccgcagaggtgacacatgggtaatttctgttatggtgttaatccaactagggttcttcattgccac |
218 |
Q |
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| T |
33161470 |
aagatccgcagctcaaatcctgccgtcgtctccgccgcagaggtgacacatgggtaatttctgttatggtgttaatccaactagggttcttcattgccac |
33161371 |
T |
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| Q |
219 |
gatgctcgtcaacgattgcttcaccaattctcacggtgattgcacttttccatctcttggaaggttctcgtttcagcctctcgctgaaaatcctctgtta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33161370 |
gatgctcgtcaacgattgcttcaccaattctcacggtgattgcacttttccatctcttggaaggttctcgtttcagcctctcgctgaaaatcctctgtta |
33161271 |
T |
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| Q |
319 |
ggtccttccatgtcaaagtgagtgttcaagttttgtcctatg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33161270 |
ggtccttccatgtcaaagtgagtgttcaagttttgttctatg |
33161229 |
T |
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