View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2715_low_19 (Length: 349)
Name: NF2715_low_19
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 35807136 - 35807440
Alignment:
| Q |
18 |
atgtaatataaaggattaaaagaagaagnnnnnnnctaacaagaccgatccgaaaaatagtcaaacctaaagaaccataagtaaaattttgttggataaa |
117 |
Q |
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| T |
35807136 |
atgtaatataaaggattaaaagaagaagaaaaaaactaacaagaccgatccgaaaaatagtcaaacctaaagaaccataagtaaaattttgttggataaa |
35807235 |
T |
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| Q |
118 |
tttatgaatggttatcatatgtttggtagaatgcaacacaccaacatgggatgtaagaaatataattaatgtatcttggcaggtgttttattttggacca |
217 |
Q |
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| T |
35807236 |
tttatgaatggttatcatatgtttggtagaatgcaacacaccaacatgggatgtaagaa--ataattaatgtatcttggcaggtgttttattttggacca |
35807333 |
T |
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| Q |
218 |
tgtgttgttgttggatttgatgtgctatatacgg-caaaataaaaccattcaaacctttatggactaaacattagtctttggattcccataagagagttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
35807334 |
tgtgttgttgttggatttgatgtgctatatacggccaaaataaaaccattcaaacctttatggtctaaacattagtctttggattcccataagagagtac |
35807433 |
T |
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| Q |
317 |
aattggt |
323 |
Q |
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||||||| |
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| T |
35807434 |
aattggt |
35807440 |
T |
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