View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2715_low_2 (Length: 881)
Name: NF2715_low_2
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 640; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 15 - 737
Target Start/End: Original strand, 41140509 - 41141233
Alignment:
| Q |
15 |
agcaaaggtagcggtgaaatgttggctcatgttgataaaggggtttatggggaatttgagcaacttacttgaaggagctgcaactgatgcaggagctgga |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
41140509 |
agcaaaggtagcggtgaaatgttggctcatgttgataaaggggtttatggggaatttgagcaacttacttgaaggagttgcaactgatgcaggagatgga |
41140608 |
T |
|
| Q |
115 |
catagcttggatgacaaggttagtgtatgcagtgaagatcaaaattcagatgaagagctaaagtagataactttagaagttaaggttcaagtaattcgtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41140609 |
catagcttggatgacaaggttagtgtatgcagtgaagatcaaaattcagatgaagagctaaagtagataactttagaagttaaggttcaagtaattcgtt |
41140708 |
T |
|
| Q |
215 |
taataag-aagaacttgagacctgtgttgtaatagattcttctgctcaagatgagtgtgtcaatggagataatagaagattggaagctaaaattaatgaa |
313 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41140709 |
taataaggaagaacttgagacctgtgttgtaatagattcttctgctcaagatgagtgtgtcaatggagataatagaagattggaagctaaaactaatgaa |
41140808 |
T |
|
| Q |
314 |
tcagggttgacatttaaagtatcgatttgtattggacttcaatgattagatgattagcaattaggttctattaattgtgtgcttccaaagaggcattctt |
413 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41140809 |
tcagagttgacatttaaagtatctatttgtattggacttcaatgattagatgattagcaattaggttctattaattgtgtgcttccaaagaggcattctt |
41140908 |
T |
|
| Q |
414 |
ttatagtcacaaacataaatgaacagtgtttggtcacacatataaaaaggcttttcctcaaaatgagagagaaagagtagattctgttgaaattgtaacc |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
41140909 |
ttatagtcacaaacataaatgaacagtgtttggtcaaacatataaaaaggcttttcctcaaaatgagagagaaagagtagattatgttgaaattgtaacc |
41141008 |
T |
|
| Q |
514 |
ataaaacaccattgttgattaagatgagaaattactcgaaccttttattgattacagagagagttcaagacaatctatcaagttaactctttacagatgg |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
41141009 |
ataaaacaccattgttgattaagatgagaaattactcgaaccttttattgattacagagagaggtcaagacaatctatcaagttaactttttacagatgg |
41141108 |
T |
|
| Q |
614 |
gtatggaagagtaatttatacttgatctaataagctaatctcagacttatatatagttcttcgccctacatttt-nnnnnnnttacaaatatttttggaa |
712 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
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|
| T |
41141109 |
gtatggaagagtaatttatatttgatctaataagctaatctcagacttatatatagttctccaccctacattttaaaaaaaattacaaatatttttggaa |
41141208 |
T |
|
| Q |
713 |
gtgtatgtttagactttagatagta |
737 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
41141209 |
gtgtatgtttagactttagatagta |
41141233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 732 - 863
Target Start/End: Original strand, 41141265 - 41141396
Alignment:
| Q |
732 |
atagtactaaatttacatttttgaatgtctacatctgaaattatgctgagagtgcggcagtggggaaatttgtgataacaaataacagtaaagcgtgtaa |
831 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41141265 |
atagtactaaatttacatttttgaatgtctacatctgaaattatgctgagagtgcggcagtggggaaatttgtgataacaaataacagtaaagcgtgtaa |
41141364 |
T |
|
| Q |
832 |
ttacaaattttgaccattgaatcacaactaac |
863 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
41141365 |
ttacaaattttgaccattgaatcacaactaac |
41141396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 12914390 - 12914332
Alignment:
| Q |
403 |
gaggcattcttttatagtcacaaacataaatgaacagtgtttggtcacacatataaaaa |
461 |
Q |
| |
|
|||| ||||||| ||||| ||||| |||||| || |||||||| ||||||||||||||| |
|
|
| T |
12914390 |
gaggtattctttcatagttacaaatataaataaatagtgtttgatcacacatataaaaa |
12914332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 35907290 - 35907435
Alignment:
| Q |
18 |
aaaggtagcggtgaaatgttggctcatgttgataaaggggtttatggggaatttgagcaacttacttgaaggagctgcaactgatgcaggagctggacat |
117 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||| || | ||||||| || || ||||||| | ||||||||||||||||||||||||| |
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|
| T |
35907290 |
aaaggtagtggtgaaatgttggatcatgttgataaaggggttgataag-aatttgattaatttggttgaaggcgttgcaactgatgcaggagctggacat |
35907388 |
T |
|
| Q |
118 |
agcttggatgacaaggttagtgtatgcagtgaagatcaaaattcaga |
164 |
Q |
| |
|
|| |||| || || ||||||||||||| ||||||||| |||||||| |
|
|
| T |
35907389 |
agtttgggtgtcagggttagtgtatgcggtgaagatcggaattcaga |
35907435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 35907593 - 35907688
Alignment:
| Q |
230 |
gagacctgtgttgtaatagattcttctgctcaagatga--gtgt----gtcaatggagataatagaagattggaagctaaaattaatgaatcaggg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
35907593 |
gagacctgtgttgtaatagattcttctgctcaagttgaacgtgtcactgtcaatggagataatagaaaattggaagctaaaactaatgaatcaggg |
35907688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 35915196 - 35915298
Alignment:
| Q |
221 |
gaagaacttgagacctgtgttgtaatagattcttctgctcaagatgagtgtgt--caatgg---agataatagaagattggaagctaaaattaatgaatc |
315 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||| ||||||| | ||||||| | |||||| ||||||||||| |||||||||||||| ||||||| | |
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|
| T |
35915196 |
gaagcacttgagacctgtgatataatagattctcctgctcaggttgagtgtttggcaatggtggagataatagaaaattggaagctaaaactaatgaacc |
35915295 |
T |
|
| Q |
316 |
agg |
318 |
Q |
| |
|
||| |
|
|
| T |
35915296 |
agg |
35915298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 402 - 461
Target Start/End: Complemental strand, 40395999 - 40395940
Alignment:
| Q |
402 |
agaggcattcttttatagtcacaaacataaatgaacagtgtttggtcacacatataaaaa |
461 |
Q |
| |
|
|||||||||||| || | |||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
40395999 |
agaggcattcttgcatggacacaaacataaatgaatagtgttttgtcacacatataaaaa |
40395940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 462
Target Start/End: Complemental strand, 404087 - 404026
Alignment:
| Q |
401 |
aagaggcattcttttatagtcacaaacataaatgaacagtgtttggtcacacatataaaaag |
462 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||| |||||||| |||||| || ||||| |
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|
| T |
404087 |
aagaggaattcttttacagtcacaaacataaatgaatagtgtttgagcacacacattaaaag |
404026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 35914992 - 35915052
Alignment:
| Q |
83 |
ttgaaggagctgcaactgatgcaggagctggacatagcttggatgacaaggttagtgtatgc |
144 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| ||| | | ||||||||||||||| |
|
|
| T |
35914992 |
ttgaaggagttgcaactgatgcaggagctggatatagc-tgggttataaggttagtgtatgc |
35915052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 407 - 453
Target Start/End: Complemental strand, 6048711 - 6048665
Alignment:
| Q |
407 |
cattcttttatagtcacaaacataaatgaacagtgtttggtcacaca |
453 |
Q |
| |
|
||||||| ||| |||||||||| ||||||| |||||||||||||||| |
|
|
| T |
6048711 |
cattcttctatggtcacaaacacaaatgaatagtgtttggtcacaca |
6048665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 33910683 - 33910828
Alignment:
| Q |
18 |
aaaggtagcggtgaaatgttggctcatgttgataaaggggtttatggggaatttgagcaacttacttgaaggagctgcaactgatgcaggagctggacat |
117 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||| || | ||||||| || || ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
33910683 |
aaaggtagtggtgaaatgttggatcatgttgataaaggggttgataag-aatttgattaatttggttgaaggcgttgcaactgatgcaggagctggacat |
33910781 |
T |
|
| Q |
118 |
agcttggatgacaaggttagtgtatgcagtgaagatcaaaattcaga |
164 |
Q |
| |
|
|| |||| || || ||||||| ||||||||||||||| |||||||| |
|
|
| T |
33910782 |
agtttgggtgtcagggttagtatatgcagtgaagatcggaattcaga |
33910828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 33910986 - 33911081
Alignment:
| Q |
230 |
gagacctgtgttgtaatagattcttctgctcaagatga--gtgt----gtcaatggagataatagaagattggaagctaaaattaatgaatcaggg |
319 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
33910986 |
gagacctgtattgtaatagattcttctgctcaagttgaacgtgtcactgtcaatggagataatagaaaattggaagctaaaactaatgaatcaggg |
33911081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 42508065 - 42508022
Alignment:
| Q |
403 |
gaggcattcttttatagtcacaaacataaatgaacagtgtttgg |
446 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42508065 |
gaggaattcttttatagtcactaacataaatgaacagtgtttgg |
42508022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 13293408 - 13293363
Alignment:
| Q |
408 |
attcttttatagtcacaaacataaatgaacagtgtttggtcacaca |
453 |
Q |
| |
|
|||| ||||||||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
13293408 |
attcatttatagtcacaagcataaatgaatagtgtttgggcacaca |
13293363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 444
Target Start/End: Original strand, 11022617 - 11022653
Alignment:
| Q |
408 |
attcttttatagtcacaaacataaatgaacagtgttt |
444 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11022617 |
attcttttatagtcacaaacataaatgcacagtgttt |
11022653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 7026516 - 7026553
Alignment:
| Q |
414 |
ttatagtcacaaacataaatgaacagtgtttggtcaca |
451 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
7026516 |
ttatagtcacaaacataaatgaatagtgtttggacaca |
7026553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 407 - 453
Target Start/End: Complemental strand, 12764511 - 12764465
Alignment:
| Q |
407 |
cattcttttatagtcacaaacataaatgaacagtgtttggtcacaca |
453 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
12764511 |
cattcttgcatagtcacaaacataaatgaaaagtatttggtcacaca |
12764465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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