View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2715_low_23 (Length: 306)
Name: NF2715_low_23
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 30757818 - 30757999
Alignment:
| Q |
1 |
tgattgcatctttccgaagcattacggttgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttagcacccaaagcac |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30757818 |
tgattgcatctttccgaagcattacgattgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttaacacccaaagcac |
30757917 |
T |
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| Q |
101 |
gctacattgatctactccatgcaagataattggatccattgaacttaggagacacagtcaccgaattgaggtccttcactatg |
183 |
Q |
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| T |
30757918 |
gctgcattgatctactccatgcaagataattggatccattgaacttaggagacacaatcaccgaatt-aggtccttcactatg |
30757999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 30765270 - 30765451
Alignment:
| Q |
1 |
tgattgcatctttccgaagcattacggttgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttagcacccaaagcac |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30765270 |
tgattgcatctttccgaagcattacgattgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttaacacccaaagcac |
30765369 |
T |
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| Q |
101 |
gctacattgatctactccatgcaagataattggatccattgaacttaggagacacagtcaccgaattgaggtccttcactatg |
183 |
Q |
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| T |
30765370 |
gctgcattgatctactccatgcaagataattggatccattgaacttaggagacacaatcaccgaatt-aggtccttcactatg |
30765451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 30758029 - 30758137
Alignment:
| Q |
182 |
tgttgttgttgttgattcgaagcacgaaccatcattccaaatcagaggaagaagatgaagatcttcgtaagaaagaaatgcagagaagcaatgcgcaaag |
281 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
30758029 |
tgttgctgttgttgattcgaagcacgaaccatcattccaaatcagaggaagaagatgaagatcttcgtaagaaataaatgcagagaagcaatacgcaaag |
30758128 |
T |
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| Q |
282 |
cttgtgaag |
290 |
Q |
| |
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|||| |||| |
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| T |
30758129 |
cttgcgaag |
30758137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 30765481 - 30765589
Alignment:
| Q |
182 |
tgttgttgttgttgattcgaagcacgaaccatcattccaaatcagaggaagaagatgaagatcttcgtaagaaagaaatgcagagaagcaatgcgcaaag |
281 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
30765481 |
tgttgctgttgttgattcgaagcacgaaccatcattccaaatcagaggaagaagatgaagatcttcgtaagaaataaatgcagagaagcaatacgcaaag |
30765580 |
T |
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| Q |
282 |
cttgtgaag |
290 |
Q |
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|||| |||| |
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| T |
30765581 |
cttgcgaag |
30765589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 25226812 - 25226644
Alignment:
| Q |
12 |
ttccgaagcattacggttgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttagcacccaaagcacgctacattgat |
111 |
Q |
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|||| |||||| ||||||||| ||||| | |||||| ||| ||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
25226812 |
ttcccaagcatgacggttgagatcatcttcatcaggcacatgtaagtttccattgatgaagggaagcttgtttttagctcccaaagcacgctacattgat |
25226713 |
T |
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| Q |
112 |
ctactccatgcaagataattggatccattgaacttaggagacacagtcaccgaattgaggtccttcacta |
181 |
Q |
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| T |
25226712 |
ccgctccatgtaagatagttggagccgttgaacataggagacacaatcaccgagtt-aggtccttcacta |
25226644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 26628832 - 26628690
Alignment:
| Q |
1 |
tgattgcatctttccgaagcattacggttgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttagcacccaaagcac |
100 |
Q |
| |
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||||||||| |||| |||| |||||||| || |||||| |||||| || || |||||||||||||| || |||||||| ||||| ||||| ||||||| |
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| T |
26628832 |
tgattgcattgttcccaagcgttacggttcagatcatcaatatcaggcacgggaagagttccattgatgaaaggaagcttattcttggcacctaaagcac |
26628733 |
T |
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| Q |
101 |
gctacattgatctactccatgcaagataattggatccattgaa |
143 |
Q |
| |
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| | ||| || | ||||||||| || || || || |||||||| |
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| T |
26628732 |
gttgcatagaacgactccatgcgaggtagttagaaccattgaa |
26628690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 26734808 - 26734666
Alignment:
| Q |
1 |
tgattgcatctttccgaagcattacggttgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttagcacccaaagcac |
100 |
Q |
| |
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||||||||| |||| |||| |||||||| || |||||| |||||| || || |||||||||||||| || |||||||| ||||| ||||| ||||||| |
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| T |
26734808 |
tgattgcattgttcccaagcgttacggttcagatcatcaatatcaggcacgggaagagttccattgatgaaaggaagcttattcttggcacctaaagcac |
26734709 |
T |
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| Q |
101 |
gctacattgatctactccatgcaagataattggatccattgaa |
143 |
Q |
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| | ||| || | ||||||||| || || || || |||||||| |
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| T |
26734708 |
gttgcatagaacgactccatgcgaggtagttagaaccattgaa |
26734666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 15447124 - 15447042
Alignment:
| Q |
49 |
acaggtagagttccattgataaagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgcaagataatt |
131 |
Q |
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||||| |||| ||||||||| || ||||| || ||||||||||| | |||||| | ||||||||| ||||||||||||||||| |
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| T |
15447124 |
acagggagagatccattgatgaaaggaagatttttcttagcacctagagcacgttgcattgatctgctccatgcaagataatt |
15447042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 9848860 - 9848923
Alignment:
| Q |
70 |
aagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgcaagataattgg |
133 |
Q |
| |
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|||||||| |||||||| |||||||||||||| ||| || | |||||||||||||||||||| |
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| T |
9848860 |
aagggaagtttgttcttcgcacccaaagcacgtctcatagagcgactccatgcaagataattgg |
9848923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 23968039 - 23968120
Alignment:
| Q |
61 |
ccattgataaagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgcaagataattggatccattga |
142 |
Q |
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|||||||| || | ||| |||||||| |||||||||||||||| |||||| | |||||| || | |||||||| ||||||| |
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| T |
23968039 |
ccattgatgaatgcaagtttgttctttgcacccaaagcacgcttcattgaacgactccaagctaagtaattggagccattga |
23968120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 18314011 - 18314074
Alignment:
| Q |
70 |
aagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgcaagataattgg |
133 |
Q |
| |
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|||||||| |||||||| ||||||||||||||| ||| || | |||||||||||||||||||| |
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| T |
18314011 |
aagggaagtttgttcttcgcacccaaagcacgcctcatagagcgactccatgcaagataattgg |
18314074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 8367884 - 8367947
Alignment:
| Q |
70 |
aagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgcaagataattgg |
133 |
Q |
| |
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|||||||| |||||||| ||||||||||||| | ||| || | |||||||||||||||||||| |
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| T |
8367884 |
aagggaagtttgttcttcgcacccaaagcacacctcatagagcgactccatgcaagataattgg |
8367947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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