View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2715_low_26 (Length: 265)
Name: NF2715_low_26
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2366212 - 2366449
Alignment:
| Q |
1 |
agtatccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggaggaca |
100 |
Q |
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| T |
2366212 |
agtatccagaccctcatttcaagaaaaaacatcataaaagaagaggtctgcagaagcctttggttggtgctattgtcgataatttatctccagggggaca |
2366311 |
T |
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| Q |
101 |
ggtatattttctgcatgctctaatataagttcactactcctttgattgttcattatgtcaattcaaatttatctttggttgttgattatggcaactctta |
200 |
Q |
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| T |
2366312 |
tgtatattttctgcatgctctaatataagtt-actactcctttgattgttcattatgtcaattcaaatttatctttggttgttgattatggcaactctta |
2366410 |
T |
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| Q |
201 |
aagaagaatgccattgagaaaaaccataatgaagtcggg |
239 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
2366411 |
aagaagaatgccgttgagaaaaaccataatgaagtcggg |
2366449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 2362049 - 2362171
Alignment:
| Q |
5 |
tccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggaggacaggta |
104 |
Q |
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||||||||||||||| ||||||||| || |||||||||||| | |||| ||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
2362049 |
tccagaccctcatttaaagaaaaaatatcataaaagaagagttttgcaaaagcctttggttggcactattgtagataatttatctccagggggacaggta |
2362148 |
T |
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| Q |
105 |
tattttctgcatgctctaatata |
127 |
Q |
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| T |
2362149 |
tattttctgcatgctctaatata |
2362171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 2354066 - 2354180
Alignment:
| Q |
5 |
tccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggaggacaggta |
104 |
Q |
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|||||||||||||||||||||||||||| |||| ||||| | | ||||||||||||||||||| |||||||| |||||||||||||| || ||||||||| |
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| T |
2354066 |
tccagaccctcatttcaagaaaaaacatcataagagaagggttttgcagaagcctttggttggtgctattgtagataatttatctcctgggggacaggta |
2354165 |
T |
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| Q |
105 |
tattttctgcatgct |
119 |
Q |
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||||||||| ||||| |
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| T |
2354166 |
tattttctgtatgct |
2354180 |
T |
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