View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2715_low_27 (Length: 261)
Name: NF2715_low_27
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 8449629 - 8449408
Alignment:
| Q |
20 |
atcatgtttgaattataaccaaacaggatgtgatgtatgtgagtgttaatatcaatacatatatactatatatgagagagaagataataactctagtgaa |
119 |
Q |
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| T |
8449629 |
atcatgtttgaattataaccaaacaggatgtgatgtatgtgagtgttaatatcaatacatatatactatatatgagagagaagataataactctagtgaa |
8449530 |
T |
|
| Q |
120 |
aagagtgnnnnnnnntattaataaaaagtgttttagtaaaaaggtgacaagtgttatcagagataatcataaggtcatttggtggtgagcaacactcacc |
219 |
Q |
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| T |
8449529 |
aagagtgaaaagaaatattaataaaaagtgttttagtaaaaaggtgacaagtgttatcagagataatcataaggtcatttggtggtgagcaacactcacc |
8449430 |
T |
|
| Q |
220 |
atattaataaattggaaaaata |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
8449429 |
atattaataaattggaaaaata |
8449408 |
T |
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