View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2715_low_4 (Length: 670)
Name: NF2715_low_4
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 232 - 659
Target Start/End: Original strand, 37135556 - 37135983
Alignment:
| Q |
232 |
cagttttttggactaaaatcatttattcattattattttgatggactttgttcatatcatgtcatgatttttagtgcaattatatattttggttttcaac |
331 |
Q |
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| T |
37135556 |
cagttttttggactaaaatcatttattcattattattttgatggtctctgttcatatcatgtcatgatttttagtgcaattatatattttggttttcaac |
37135655 |
T |
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| Q |
332 |
gtgagcattgattggttttattctatttgtgatgtaattgtataattgtgaatttttatgtttctagaaannnnnnncttccacattcggatatgaaatc |
431 |
Q |
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| T |
37135656 |
gtgagcattgattggttttattctatttgtgatgtaattgtataattgtgaatttttatgtttctagaaaaaaaattcttccacattcggatatgaaatc |
37135755 |
T |
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| Q |
432 |
agatctataattatactagtatttggttttataacaatccaatatgcagaacctgtagcatgaaacaaggggaaaggaaggaaacttcatttacgtttct |
531 |
Q |
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| T |
37135756 |
agatctataattatactagtatttggttttataacaatccaatatgcagaacctgtagcatgaaacaaggggaaaggaaggaaacttcatttacgtttct |
37135855 |
T |
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| Q |
532 |
gttattccaactttattcaatcgtataaaagttaaaatattaaagattgtatactttttgttgttataaacataaagagagaaagttgtgttttcaattt |
631 |
Q |
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| T |
37135856 |
gttattccaactttattcaatcgtataaaagttaaaatattaaagattgtatactttttgttgttataaacataaagagagaaagttgtgttttcaattt |
37135955 |
T |
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| Q |
632 |
taccttttgagcatcaattgagtttctt |
659 |
Q |
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| T |
37135956 |
taccctttgagcatcaattgagtttctt |
37135983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 37135344 - 37135491
Alignment:
| Q |
20 |
ttaaggtgtggaaaaagctgcagacttagatgggctaatcatctgaggccgaatcttaaaaagggttcattttctgaagaggaagaaaaaatcatcatgg |
119 |
Q |
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| T |
37135344 |
ttaaggtgtggaaaaagctgcagacttagatgggctaatcatctgaggccgaatcttaaaaagggttcattttctgaagaggaagaaaaaatcatcattg |
37135443 |
T |
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| Q |
120 |
aacttcatgctaagcttggaaacaaatgggctcgaatggctactcagg |
167 |
Q |
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| T |
37135444 |
aacttcatgctaagcttggaaacaaatgggctcgaatggctactcagg |
37135491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 20741013 - 20740879
Alignment:
| Q |
26 |
tgtggaaaaagctgcagacttagatgggctaatcatctgaggccgaatcttaaaaagggttcattttctgaagaggaagaaaaaatcatcatggaacttc |
125 |
Q |
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| T |
20741013 |
tgtgggaaaagttgtaggcttagatgggctaatcatttaagacccaacttgaagaaaggtgcattttctcatgaagaagagaaaatcattgttgaactcc |
20740914 |
T |
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| Q |
126 |
atgctaagcttggaaacaaatgggctcgaatggct |
160 |
Q |
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| T |
20740913 |
atgctcaatttggtaacaaatgggctcgaatggct |
20740879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 33732270 - 33732242
Alignment:
| Q |
20 |
ttaaggtgtggaaaaagctgcagacttag |
48 |
Q |
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| T |
33732270 |
ttaaggtgtggaaaaagctgcagacttag |
33732242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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