View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2715_low_5 (Length: 644)

Name: NF2715_low_5
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2715_low_5
NF2715_low_5
[»] chr1 (4 HSPs)
chr1 (6-510)||(30757156-30757659)
chr1 (6-510)||(30764608-30765111)
chr1 (507-627)||(30757682-30757802)
chr1 (507-627)||(30765134-30765254)
[»] chr4 (3 HSPs)
chr4 (26-350)||(25227120-25227444)
chr4 (418-510)||(25226978-25227070)
chr4 (524-627)||(25226839-25226942)
[»] chr8 (2 HSPs)
chr8 (414-507)||(44228096-44228189)
chr8 (532-613)||(44227969-44228050)
[»] chr5 (1 HSPs)
chr5 (408-489)||(15447352-15447433)
[»] chr7 (3 HSPs)
chr7 (505-625)||(15997171-15997291)
chr7 (505-625)||(14580169-14580288)
chr7 (426-482)||(24064590-24064646)
[»] chr6 (3 HSPs)
chr6 (30-149)||(20700433-20700552)
chr6 (552-613)||(20700975-20701036)
chr6 (385-482)||(20700787-20700884)


Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 6 - 510
Target Start/End: Original strand, 30757156 - 30757659
Alignment:
Q  6 agtagcataggcctgtgaaatcttcttgttcacattaggatagccatgcttttgatagaaaaagtcaattgtgtgattgtgtctatttcaaaaaatgcaa 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30757156 agtagcattggcctgtgaaatcttcttgttcacattaggatagccatgcttttgatagaaaaagtcaattgtgtgattgtgtctatttcaaaaaatgcaa 30757255  T
Q  106 aaccttgatgaaggtttagtgaatgaacatttaccacgcccttaaggtttctttgcatcatatgcattaacaagcacattatcttcagcaagagaaggga 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30757256 aaccttgatgaaggtttagtgaatgaacatttaccacgcccttaaggtttctttgcatcatatgcattaacaagcacattatcttcagcaagagaaggga 30757355  T
Q  206 gtgaaagaagagaagtatttttactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcac 305  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30757356 gtgaaagaagagaagtattattactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcac 30757455  T
Q  306 aacaaaaaattgcttattgatgccagttaaaaactgaatgatttgatcctcacttctatatgtcttggtaagcttaagagcatcacatcaacattgatga 405  Q
    | ||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| |  |||| ||||||||||||||||||||||||||||    
T  30757456 agcaaaaaattgcttattgatgctagttaaaaactgaatgatttggtcctcatttctatatgtgtcagtaaccttaagagcatcacatcaacattgatga 30757555  T
Q  406 taacaagtacaatttgggagaggacgatgagaatgtaagtcttcccacaaagctttcatttcagtgaaataatccaacacaaatttggtattttgcctaa 505  Q
    | || ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30757556 tgac-agtacaatttgggagaggaggatgagaatgtaattcttcccacaaagctttcatttcagtgaaataatccaacacaaatttggtattttgcctaa 30757654  T
Q  506 gattg 510  Q
    |||||    
T  30757655 gattg 30757659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 6 - 510
Target Start/End: Original strand, 30764608 - 30765111
Alignment:
Q  6 agtagcataggcctgtgaaatcttcttgttcacattaggatagccatgcttttgatagaaaaagtcaattgtgtgattgtgtctatttcaaaaaatgcaa 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30764608 agtagcattggcctgtgaaatcttcttgttcacattaggatagccatgcttttgatagaaaaagtcaattgtgtgattgtgtctatttcaaaaaatgcaa 30764707  T
Q  106 aaccttgatgaaggtttagtgaatgaacatttaccacgcccttaaggtttctttgcatcatatgcattaacaagcacattatcttcagcaagagaaggga 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30764708 aaccttgatgaaggtttagtgaatgaacatttaccacgcccttaaggtttctttgcatcatatgcattaacaagcacattatcttcagcaagagaaggga 30764807  T
Q  206 gtgaaagaagagaagtatttttactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcac 305  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30764808 gtgaaagaagagaagtattattactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcac 30764907  T
Q  306 aacaaaaaattgcttattgatgccagttaaaaactgaatgatttgatcctcacttctatatgtcttggtaagcttaagagcatcacatcaacattgatga 405  Q
    | ||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| |  |||| ||||||||||||||||||||||||||||    
T  30764908 agcaaaaaattgcttattgatgctagttaaaaactgaatgatttggtcctcatttctatatgtgtcagtaaccttaagagcatcacatcaacattgatga 30765007  T
Q  406 taacaagtacaatttgggagaggacgatgagaatgtaagtcttcccacaaagctttcatttcagtgaaataatccaacacaaatttggtattttgcctaa 505  Q
    | || ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30765008 tgac-agtacaatttgggagaggaggatgagaatgtaattcttcccacaaagctttcatttcagtgaaataatccaacacaaatttggtattttgcctaa 30765106  T
Q  506 gattg 510  Q
    |||||    
T  30765107 gattg 30765111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 507 - 627
Target Start/End: Original strand, 30757682 - 30757802
Alignment:
Q  507 attggcaattctaatatgatcaatcttagaaaaacgttccttcaaatcctcccaaaaatcaaaagcattatcatgaaacaatatagtttgagaaattgaa 606  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30757682 attggcaattctaatacgatcaatcttagaaaaacgttccttcaaatcctcccaaaaatcaaaagcattatcatgaaacaatatagtttgagaaattgaa 30757781  T
Q  607 tcagaaatataattaataatc 627  Q
    ||||||| | |||||||||||    
T  30757782 tcagaaacagaattaataatc 30757802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 507 - 627
Target Start/End: Original strand, 30765134 - 30765254
Alignment:
Q  507 attggcaattctaatatgatcaatcttagaaaaacgttccttcaaatcctcccaaaaatcaaaagcattatcatgaaacaatatagtttgagaaattgaa 606  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30765134 attggcaattctaatacgatcaatcttagaaaaacgttccttcaaatcctcccaaaaatcaaaagcattatcatgaaacaatatagtttgagaaattgaa 30765233  T
Q  607 tcagaaatataattaataatc 627  Q
    ||||||| | |||||||||||    
T  30765234 tcagaaacagaattaataatc 30765254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 26 - 350
Target Start/End: Complemental strand, 25227444 - 25227120
Alignment:
Q  26 tcttcttgttcacattaggatagccatgcttttgatagaaaaagtcaattgtgtgattgtgtctatttcaaaaaatgcaaaaccttgatgaaggtttagt 125  Q
    ||||||| ||||||||| |||| | ||| |||| |||  |||| ||||| ||||||||||| ||||| |||||  | |||||||||||||||||||||||    
T  25227444 tcttcttattcacattaagatatcaatgttttttataacaaaaatcaatggtgtgattgtgcctattgcaaaaggtacaaaaccttgatgaaggtttagt 25227345  T
Q  126 gaatgaacatttaccacgcccttaaggtttctttgcatcatatgcattaacaagcacattatcttcagcaagagaagggagtgaaagaagagaagtattt 225  Q
    |||||||| ||||||| ||||||  |||||||| |||||||||||||||||||| |||||||| ||  |||| ||||| | |||| | | ||||| |||     
T  25227344 gaatgaacctttaccatgcccttgtggtttcttcgcatcatatgcattaacaagtacattatcctcgacaagggaaggaattgaaggtaaagaagcattg 25227245  T
Q  226 ttactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcacaacaaaaaattgcttattga 325  Q
     ||||||||||||| ||||||||| |||||  ||| ||||||||||| |   ||| ||||||||| ||| ||||||| |||||| ||||||||| | |||    
T  25227244 ctactttcttcttgcaaaaccaaaaagaaaaccttgttcaaggtaggtagaagatacatcaataacacttgagtcttgacaacagaaaattgctcactga 25227145  T
Q  326 tgccagttaaaaactgaatgatttg 350  Q
     | |||| |||||||||||||||||    
T  25227144 ggtcagtcaaaaactgaatgatttg 25227120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 510
Target Start/End: Complemental strand, 25227070 - 25226978
Alignment:
Q  418 tttgggagaggacgatgagaatgtaagtcttcccacaaagctttcatttcagtgaaataatccaacacaaatttggtattttgcctaagattg 510  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||| || |||||| ||||||||  ||| |||||||||    
T  25227070 tttgggagaggacgatgggaatgtaattcttcccataaagctttcatttcaatgaaatactctaacacatatttggtaccttgtctaagattg 25226978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 524 - 627
Target Start/End: Complemental strand, 25226942 - 25226839
Alignment:
Q  524 gatcaatcttagaaaaacgttccttcaaatcctcccaaaaatcaaaagcattatcatgaaacaatatagtttgagaaattgaatcagaaatataattaat 623  Q
    ||||||||||||| || || || |||||||||||||||| |||||| || | ||||||||| | |||||| |||| |||| |||||| || | |||| ||    
T  25226942 gatcaatcttagagaagcgctctttcaaatcctcccaaacatcaaaggcgtaatcatgaaatactatagtctgagcaattaaatcagtaacagaattgat 25226843  T
Q  624 aatc 627  Q
    ||||    
T  25226842 aatc 25226839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 507
Target Start/End: Complemental strand, 44228189 - 44228096
Alignment:
Q  414 acaatttgggagaggacgatgagaatgtaagtcttcccacaaagctttcatttcagtgaaataatccaacacaaatttggtattttgcctaaga 507  Q
    ||||||||| || || | ||||||||| || |||||||||||||| ||||| || |||||||||||||| ||| |||||| |  ||||||||||    
T  44228189 acaatttggaaggggcctatgagaatgcaattcttcccacaaagccttcatctctgtgaaataatccaaaacagatttggcaccttgcctaaga 44228096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 613
Target Start/End: Complemental strand, 44228050 - 44227969
Alignment:
Q  532 ttagaaaaacgttccttcaaatcctcccaaaaatcaaaagcattatcatgaaacaatatagtttgagaaattgaatcagaaa 613  Q
    ||||| ||||||||||| |  |||||||| | ||||||||||||||||||||| |  || ||||| | ||||||||| ||||    
T  44228050 ttagagaaacgttcctttaggtcctcccatacatcaaaagcattatcatgaaaaacaattgtttgtgcaattgaatctgaaa 44227969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 408 - 489
Target Start/End: Complemental strand, 15447433 - 15447352
Alignment:
Q  408 acaagtacaatttgggagaggacgatgagaatgtaagtcttcccacaaagctttcatttcagtgaaataatccaacacaaat 489  Q
    |||||||||||| || |||||||| |||||||| |  |||||||| ||||||||||  ||||||||||| ||||| ||||||    
T  15447433 acaagtacaattgggaagaggacggtgagaatgaagttcttcccataaagctttcaactcagtgaaatactccaaaacaaat 15447352  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 625
Target Start/End: Complemental strand, 15997291 - 15997171
Alignment:
Q  505 agattggcaattctaatatgatcaatcttagaaaaacgttccttcaaatcctcccaaaaatcaaaagcattatcatgaaacaatatagtttgagaaattg 604  Q
    ||||| ||||||| |||| |||||||||| ||||||| ||  ||||||||   |||||  |||| || | |||||  ||||| ||||||||||| ||| |    
T  15997291 agatttgcaattcaaatacgatcaatctttgaaaaactttgtttcaaatcaagccaaacttcaagagaagtatcacaaaacattatagtttgagtaatgg 15997192  T
Q  605 aatcagaaatataattaataa 625  Q
    |||||||||||||||| ||||    
T  15997191 aatcagaaatataattgataa 15997171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 625
Target Start/End: Complemental strand, 14580288 - 14580169
Alignment:
Q  505 agattggcaattctaatatgatcaatcttagaaaaacgttccttcaaatcctcccaaaaatcaaaagcattatcatgaaacaatatagtttgagaaattg 604  Q
    ||||| ||||||| |||  |||||||||| ||||| ||||| ||||||||   |||||  |||| |||| |||||  ||||| ||||||||||| ||| |    
T  14580288 agatttgcaattcgaatgcgatcaatctttgaaaa-cgttctttcaaatcaagccaaacttcaagagcagtatcacaaaacactatagtttgagtaatgg 14580190  T
Q  605 aatcagaaatataattaataa 625  Q
    ||||||||||| |||| ||||    
T  14580189 aatcagaaataaaattgataa 14580169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 24064590 - 24064646
Alignment:
Q  426 aggacgatgagaatgtaagtcttcccacaaagctttcatttcagtgaaataatccaa 482  Q
    ||||||||||||||  || |||||||| | || ||||||||||||||| ||||||||    
T  24064590 aggacgatgagaattcaactcttcccaaagagttttcatttcagtgaagtaatccaa 24064646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 20700433 - 20700552
Alignment:
Q  30 cttgttcacattaggatagccatgcttttgatagaaaaagtcaattgtgtgattgtgtctatttcaaaaaatgcaaaaccttgatgaaggtttagtgaat 129  Q
    |||||||||||||||| || ||||||||||||| |||||  |||   ||||||||| | | || |||||  ||||| ||||||| ||||||||| || ||    
T  20700433 cttgttcacattaggaaagtcatgcttttgataaaaaaaaacaacattgtgattgtatttgttgcaaaaggtgcaataccttgaagaaggtttaatgtat 20700532  T
Q  130 gaacatttaccacgccctta 149  Q
    || | |||| ||||||||||    
T  20700533 gatcctttatcacgccctta 20700552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 552 - 613
Target Start/End: Original strand, 20700975 - 20701036
Alignment:
Q  552 atcctcccaaaaatcaaaagcattatcatgaaacaatatagtttgagaaattgaatcagaaa 613  Q
    ||||||||||| ||||||| ||||||||||||| | |||||| |||| |||||||| |||||    
T  20700975 atcctcccaaacatcaaaatcattatcatgaaaaactatagtctgagcaattgaataagaaa 20701036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 482
Target Start/End: Original strand, 20700787 - 20700884
Alignment:
Q  385 gcatcacatcaacattgatgataacaagtacaatttgggagaggacgatgagaatgtaagtcttcccacaaagctttcatttcagtgaaataatccaa 482  Q
    |||||||||| ||| | ||||| | ||| ||||||||| | |||| ||||||| | ||| |  | ||||||| |||| ||||||||||||||||||||    
T  20700787 gcatcacatctacactaatgatgataagaacaatttggaaaaggaagatgagagtataatttctgccacaaaacttttatttcagtgaaataatccaa 20700884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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