View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2715_low_6 (Length: 637)
Name: NF2715_low_6
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 522
Target Start/End: Original strand, 12650663 - 12651165
Alignment:
| Q |
20 |
aatgtgcaggtttcgtgaattccacttcgtgataagtagcactgctctttgctaaatgtgatgtatattttattgctcataaataaattgaacaatagtt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12650663 |
aatgtgcaggtttcgtgaattccacttcgtgttaagtagcactgctctttgctaaatgtgatgtatattttattgctcataaataaattgaacaatagtt |
12650762 |
T |
|
| Q |
120 |
cttgtatcctttatcattctnnnnnnnnnnnnnnnnnnaggtcccaagaaaacgttttggaatagactgctaggatggaaccatagaagcatatcagtag |
219 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12650763 |
cttgtatcctttttcattctttgttgttgttgttgttgaggtcccaagaaaacgttttggaatagactgctaggatggaaccatagaagcatatcagtag |
12650862 |
T |
|
| Q |
220 |
ggtatttcaaaataaatattagggctagtcgataaagtggcccgacttgataaagcatgaactatcctgtttgtttgtctccgattaaaccgtacccaag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
12650863 |
ggtatttcaaaataaatattagggctagtcgataaagtggcctgatttgataaagcatgaactaccttgtttgtttgtctccgattaaaccgtacccaag |
12650962 |
T |
|
| Q |
320 |
agtttgtaaagtgagctatgataacataaccaaatttcgtaacataaagccgtctgaaaagcatgagtagattgttcatatttcagcagagaatcatggg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12650963 |
agtttgtaaagtgagctatgataacataaccaaatttcgtaacataaagccgtctgaaaagcatgagtagattgttcatatttcaggagagaatcatggg |
12651062 |
T |
|
| Q |
420 |
aagaattaaaatatgaaaaataggctttaatggagtagatgttgactttgtaccagaataaaagcaattaattggtaataaaagctgattcattttgtca |
519 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12651063 |
aaaaattaaaatatgaaaaataggctttaatggagtagatgttgactttgtaccagaataaaagcaattaattggtaataaaagctgattcattttgtca |
12651162 |
T |
|
| Q |
520 |
gag |
522 |
Q |
| |
|
||| |
|
|
| T |
12651163 |
gag |
12651165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 559 - 627
Target Start/End: Original strand, 12651202 - 12651270
Alignment:
| Q |
559 |
tcaacagtttgcaattttgactcaacccaacaagcagagcaatatatctcacttcagtgcttttctctg |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12651202 |
tcaacagtttgcaattttgactcaacccaacaagcagagcaatatatctcacttcagtgcttttctctg |
12651270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 565 - 625
Target Start/End: Original strand, 12646075 - 12646135
Alignment:
| Q |
565 |
gtttgcaattttgactcaacccaacaagcagagcaatatatctcacttcagtgcttttctc |
625 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
12646075 |
gtttgcaactttgactcaacccaacaagcagtgtaatatatctcacttctgtgcttttctc |
12646135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 217 - 336
Target Start/End: Original strand, 12645558 - 12645677
Alignment:
| Q |
217 |
tagggtatttcaaaataaatattagggctagtcgataaagtggcc-cgacttgataaagcatgaactatcctgtttgtttgtctccgattaaaccgtacc |
315 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||||||||||||| || |||| ||| ||| | ||||| |||||||||||||||| |||| |||| |
|
|
| T |
12645558 |
taggatatttcaaaataaatattcgggctatccgataaagtggcctcgtcttgccaaatcat-agctatcacatttgtttgtctccgatcaaactttacc |
12645656 |
T |
|
| Q |
316 |
caagagtttgtaaagtgagct |
336 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
12645657 |
cgagagtttgtaaagtgagct |
12645677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 12645394 - 12645448
Alignment:
| Q |
70 |
gctaaatgtgatgtatattttattgctcataaataaattgaacaatagttcttgt |
124 |
Q |
| |
|
||||||||||||| ||| ||| | ||| |||||||||||| |||||||||||||| |
|
|
| T |
12645394 |
gctaaatgtgatgcatactttctagcttataaataaattggacaatagttcttgt |
12645448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University