View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2715_low_7 (Length: 623)
Name: NF2715_low_7
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 364 - 606
Target Start/End: Complemental strand, 41832349 - 41832107
Alignment:
| Q |
364 |
tatgataaccttgtgagtgaagaaaaataataagaaaaagtaaaaagacaaggccatggagtcaaagacaagacgaccaccaatatgtctcaaataatat |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832349 |
tatgataaccttgtgagtgaagaaaaataataagaaaaagtaaaaagacaaggccatggagtcaaagacaagacgaccaccaatatgtctcaaataatat |
41832250 |
T |
|
| Q |
464 |
tatgtctctctccaaaccgtttcttactaccaactcttttttctcactctttcctatattgtaagcaaacaccataaccatcacaatcatcatcatgttc |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832249 |
tatgtctctctccaaaccgtttcttactaccaactcttttttctcactctttcctatattgtaagcaaacaccataaccatcacaatcatcatcatgttc |
41832150 |
T |
|
| Q |
564 |
attattaatttatttcctccttatgaagcttctttctaatctt |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832149 |
attattaatttatttcctccttatgaagcttctttctaatctt |
41832107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 75 - 283
Target Start/End: Complemental strand, 41832638 - 41832430
Alignment:
| Q |
75 |
ggtgataaaacttaagcatgttgatcttatgttaaaaatattaaactaagaaacaggaaaatattcattattaattaaagtgtgtgccgtcctagctttt |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832638 |
ggtgataaaacttaagcatgttgatcttatgttaaaaatattaaactaagaaacaggaaaatattcattattaattaaagtgtgtgccgtcctagctttt |
41832539 |
T |
|
| Q |
175 |
attgattaacccttgtaaatgttggacttctatatatcttcaactacacgtgttgagagattatgtgaagtggaagcaaaaaacttagcttggttataaa |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832538 |
attgattaacccttgtaaatgttggacttctatatatcttcaactacacgtgttgagagattatgtgaagtggaagcaaaaaacttagcttggttataaa |
41832439 |
T |
|
| Q |
275 |
acaaactgt |
283 |
Q |
| |
|
||||||||| |
|
|
| T |
41832438 |
acaaactgt |
41832430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 41832699 - 41832663
Alignment:
| Q |
14 |
ataatactattgattaaaatggacatatttgagtctg |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832699 |
ataatactattgattaaaatggacatatttgagtctg |
41832663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 436
Target Start/End: Complemental strand, 24360396 - 24360323
Alignment:
| Q |
365 |
atgataaccttgtgagtgaagaaaaataataagaaaaagtaaaaaga---caaggccatggagtcaaagacaaga |
436 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
24360396 |
atgattaccttgtgagtgaagaaaaaaaata-gaaaattgaaaaagaaaacaaggccatggagtcaaagacaaga |
24360323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 24360548 - 24360503
Alignment:
| Q |
234 |
attatgtgaagtggaagcaaaaaacttagcttggttataaaacaaa |
279 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
24360548 |
attatgtgaagtggaagcaaataacttggcttcattataaaacaaa |
24360503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University