View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2715_low_9 (Length: 495)
Name: NF2715_low_9
Description: NF2715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2715_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 314 - 479
Target Start/End: Original strand, 40247431 - 40247596
Alignment:
| Q |
314 |
ttagaatatgagaactcaaaattgtcgtttagtccaatgttggattgcttttataaaaaacgacggcgtgtaaaaactgtataccgtctttggtatctat |
413 |
Q |
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| T |
40247431 |
ttagaatatgagaactcaaaattgtcgtttagtccaatgttggattgcttttataaaaaacgacggcgtgtaaaaactgcataccgtctttggtatctac |
40247530 |
T |
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| Q |
414 |
cagctgcgtttggatggaggaattaccggagtgcccagtgtgtcttcaaaactacgacgacgaaaa |
479 |
Q |
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| T |
40247531 |
cagctgcgtttggatggaggagttaccggagtgcccagtgtgtcttcaaaactacgacgacgaaaa |
40247596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 40245880 - 40246052
Alignment:
| Q |
13 |
aatatatacatatatacataatacgagattcaaacctcaatcatnnnnnnnnnnnnnnn--tgcattaatgcttctaaacataaatcataataatttttc |
110 |
Q |
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| T |
40245880 |
aatatatacatatatacataatacgagattcaaacctcaatcataaaaaaaaaaaaaaaaatgcattaatgcttctaaacataaatcataataatttttc |
40245979 |
T |
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| Q |
111 |
aaaatcatttccgtacaccacataaccaaataaacggttaaaatatcaattttaaatggaaccttttttgcca |
183 |
Q |
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| T |
40245980 |
aaaatcatttccgtacaccgcataaccaaataaacggttaaaatatcaattttaaatggaaccttttttgcca |
40246052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 40246096 - 40246196
Alignment:
| Q |
220 |
gactaaagctcacatcatttaaaaactggagtgctcgaatccgaagttctgcccttacatatatctatc---aaatggagttcgagattgccaacattta |
316 |
Q |
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| T |
40246096 |
gactaaagctcacatcatttaataactggagtgtcggaatccgaacttctgcccttacatatatctatctatcaatggagttcgagattgccaacattta |
40246195 |
T |
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| Q |
317 |
g |
317 |
Q |
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| T |
40246196 |
g |
40246196 |
T |
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