View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2716_high_1 (Length: 464)
Name: NF2716_high_1
Description: NF2716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2716_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 269 - 451
Target Start/End: Complemental strand, 52759611 - 52759429
Alignment:
| Q |
269 |
acatgtatgggtcataagcctagagctcaaaaaataattgtcaatacttgacagaattgccaagtaccaggaagcaaatcctggtgtgtacacaatcatc |
368 |
Q |
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| T |
52759611 |
acatgtatgggtcataagcctagagctcaaaaaataattgtcaatacttgacagaattgccaagtaccaggaagcaaatcctggtgtgtacacaatcatc |
52759512 |
T |
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| Q |
369 |
acgtttcctttccttttcgctgtaatgtttggtgattggggtcatggcatatgcttattattggcaactttgtatttcataat |
451 |
Q |
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| T |
52759511 |
acgtttcctttccttttcgctgtaatgtttggtgattggggtcatggcatatgcttattattggcaactttgtatttcataat |
52759429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 52759871 - 52759670
Alignment:
| Q |
26 |
aagttacacaatgtttagcatgttcatatgatacttttattttatataataacaataatatgcatatggttagacataaaaatgctaacaattgagcnnn |
125 |
Q |
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| T |
52759871 |
aagttacacaatgtttagcatgttcatatgatacttttattttatataataacaataatatgcatatggttagacataaaaatgctaacaattgagcttt |
52759772 |
T |
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| Q |
126 |
nnnnaaggtctttgtatatccttagacatgaatgtcata--nnnnnnnnnnacattatctctgcattcctttagttttaaattaaggtatatggttctgg |
223 |
Q |
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| T |
52759771 |
ttttaaggtctttgtatatccttagacatgaatgtcatattttttttttttacattatctctgcattcctttagttttaaattaaggtttatggttctgg |
52759672 |
T |
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| Q |
224 |
ta |
225 |
Q |
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|| |
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| T |
52759671 |
ta |
52759670 |
T |
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