View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2716_high_3 (Length: 422)

Name: NF2716_high_3
Description: NF2716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2716_high_3
NF2716_high_3
[»] chr4 (47 HSPs)
chr4 (1-422)||(27524222-27524644)
chr4 (1-422)||(27503621-27504042)
chr4 (1-418)||(27508564-27508968)
chr4 (9-422)||(27514591-27515011)
chr4 (3-422)||(27475599-27476009)
chr4 (9-422)||(27468347-27468770)
chr4 (188-416)||(27497348-27497576)
chr4 (270-422)||(27489928-27490080)
chr4 (270-422)||(27420376-27420528)
chr4 (299-422)||(27570069-27570192)
chr4 (344-422)||(27412706-27412784)
chr4 (344-414)||(27415663-27415733)
chr4 (301-418)||(27526136-27526253)
chr4 (344-422)||(27425854-27425932)
chr4 (288-422)||(27478903-27479037)
chr4 (288-422)||(27485963-27486097)
chr4 (301-422)||(27424534-27424655)
chr4 (301-422)||(27505722-27505843)
chr4 (344-422)||(27423264-27423342)
chr4 (344-418)||(27431172-27431246)
chr4 (288-422)||(27523423-27523557)
chr4 (338-422)||(27414324-27414408)
chr4 (338-422)||(27479937-27480021)
chr4 (346-422)||(27502827-27502903)
chr4 (343-422)||(27585729-27585808)
chr4 (301-422)||(27486982-27487103)
chr4 (346-422)||(27557533-27557609)
chr4 (355-422)||(27527214-27527281)
chr4 (343-422)||(27563366-27563445)
chr4 (344-422)||(27498457-27498535)
chr4 (301-422)||(27411476-27411597)
chr4 (301-422)||(27419091-27419212)
chr4 (301-422)||(27476686-27476807)
chr4 (357-418)||(27554364-27554425)
chr4 (301-422)||(27571622-27571743)
chr4 (299-422)||(27565971-27566094)
chr4 (344-422)||(27444814-27444892)
chr4 (344-422)||(27516629-27516707)
chr4 (301-422)||(27513796-27513917)
chr4 (301-422)||(27567254-27567375)
chr4 (346-422)||(17970343-17970419)
chr4 (370-422)||(27502155-27502207)
chr4 (346-381)||(27945687-27945722)
chr4 (344-418)||(27501359-27501433)
chr4 (352-414)||(27556407-27556469)
chr4 (301-422)||(27469459-27469580)
chr4 (394-422)||(27559260-27559288)
[»] chr3 (12 HSPs)
chr3 (346-422)||(50910004-50910080)
chr3 (299-422)||(55084783-55084906)
chr3 (346-422)||(50911889-50911965)
chr3 (346-419)||(38033802-38033875)
chr3 (346-422)||(38028786-38028862)
chr3 (346-422)||(38043947-38044023)
chr3 (288-422)||(38024895-38025029)
chr3 (288-422)||(38031347-38031481)
chr3 (352-422)||(50904812-50904882)
chr3 (346-422)||(38040101-38040177)
chr3 (347-422)||(38036813-38036888)
chr3 (347-422)||(48840732-48840806)
[»] chr5 (2 HSPs)
chr5 (288-422)||(1756777-1756911)
chr5 (344-422)||(1754730-1754808)
[»] chr8 (3 HSPs)
chr8 (346-422)||(21604774-21604850)
chr8 (346-422)||(21607316-21607392)
chr8 (362-422)||(21634603-21634663)
[»] chr2 (1 HSPs)
chr2 (346-422)||(3073613-3073689)
[»] chr7 (1 HSPs)
chr7 (289-326)||(21477489-21477526)


Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 27524222 - 27524644
Alignment:
Q  1 cacatgctaccttatccctatgatctatatccttcaaccccatcaataatagtttttcttggaatttggttttgagagaacttcaaaatctataaataca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||| |    
T  27524222 cacatgctaccttatccctatgatctatatccttcaaccccttcaataatagtttttcttgaaatttgggtttgagagaactttaaaatctatatataaa 27524321  T
Q  101 cttactatctccttcactaacagcacaaatcattgcatcatcaaaaatttagttacttccttcttacatttgagannnnnnn-ctgtacttctctcgaac 199  Q
    ||| || |||||||||| ||||| | || ||||||||| |||||| |||||||||| |||||| |||||||||||        |||| |||||||| |||    
T  27524322 cttcctctctccttcacaaacagaaaaactcattgcattatcaaatatttagttacatccttcatacatttgagattttttctctgttcttctctcaaac 27524421  T
Q  200 aataacaaaaaatgggtttccgtttacacactattctaaagggttcagtaacttctagtcaagcaaaattaaaatctgtagaagtgagaaagggctacgt 299  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  27524422 tataacaaaaaatgggtttccgtttacacactattctaaagggttcagtaacgtctagtcaagcaaaatcaaaatctgtagaagtgagaaagggctacgt 27524521  T
Q  300 tgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27524522 tgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagag 27524621  T
Q  400 tttggatatgatcatccaatggg 422  Q
    |||||||||||||||||||||||    
T  27524622 tttggatatgatcatccaatggg 27524644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 27503621 - 27504042
Alignment:
Q  1 cacatgctaccttatccctatgatctatatccttcaaccccatcaataatagtttttcttggaatttggttttgagagaacttcaaaatctataaataca 100  Q
    |||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||| |||||||||| ||||||||| ||||||||||||    
T  27503621 cacatgctacattatccctatgatctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaataca 27503720  T
Q  101 cttactatctccttcactaacagcacaaatcattgcatcatcaaaaatttagttacttccttcttacatttgag-annnnnnnctgtacttctctcgaac 199  Q
    ||| || |||||||||| |||||||||| |||||||||||||||| | ||| |||| ||| ||||||||||||  |       |||| |||| |||||||    
T  27503721 cttcctctctccttcacaaacagcacaattcattgcatcatcaaatacttaattacatccatcttacatttgatcatttttcactgttcttcactcgaac 27503820  T
Q  200 aataacaaaaaatgggtttccgtttacacactattctaaagggttcagtaacttctagtcaagcaaaattaaaatctgtagaagtgagaaagggctacgt 299  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||| ||| ||| || |||||| |||||||||| ||||||||| ||    
T  27503821 aataagaaaa-atgggtttccgtttacacactattctaaagggttcagtaacagctagacaaacaacatcaaaatcagtagaagtgaaaaagggctatgt 27503919  T
Q  300 tgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagag 399  Q
    | | |||||||||||||||||| || |||||||  |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  27503920 ttccgtgtatgttggagagaaattggcgcggtttgtagttcctgtatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagag 27504019  T
Q  400 tttggatatgatcatccaatggg 422  Q
    |||||||||||||||||||||||    
T  27504020 tttggatatgatcatccaatggg 27504042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 27508564 - 27508968
Alignment:
Q  1 cacatgctaccttatccctatgatctatatccttcaaccccatcaataatagtttttcttggaatttggttttgagagaacttcaaaatctataaataca 100  Q
    |||||||||||||||| ||||| ||| |||||||| ||||| ||||||||||||||||| |||||| |||||||||| ||||||||| ||||||||||||    
T  27508564 cacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaataca 27508663  T
Q  101 cttactatctccttcactaacagcacaaatcatt-gcatcatcaaaaatttagttacttccttcttacatttgagannnnnnnct--gtacttctctcga 197  Q
    ||| || |||||||||| |||||||||| ||||| ||||||||||  | |||||||| |||||||||| ||||| |       ||  || ||||||||||    
T  27508664 cttcctctctccttcacaaacagcacaactcattagcatcatcaattacttagttacatccttcttacttttgatatttttttctctgttcttctctcga 27508763  T
Q  198 acaataacaaaaaatgggtttccgtttacacactattctaaagggttcagtaacttctagtcaagcaaaattaaaatctgtagaagtgagaaagggctac 297  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||               ||| ||||||| |||||||||||||||||||     
T  27508764 acaataagaaaaa-tgggtttccgtttacatactattctaaagggttcagtaa---------------aatcaaaatctatagaagtgagaaagggctat 27508847  T
Q  298 gttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaag 397  Q
    |||||||||||||||||||||||||||||||| ||  | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27508848 gttgcagtgtatgttggagagaaactgacgcgttttgtcgttcctgtgtcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaag 27508947  T
Q  398 agtttggatatgatcatccaa 418  Q
    |||||||||||||||||||||    
T  27508948 agtttggatatgatcatccaa 27508968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 9 - 422
Target Start/End: Original strand, 27514591 - 27515011
Alignment:
Q  9 accttatccctatgatctatatccttcaaccccatcaataatagtttttcttggaatttggttttgagagaacttcaaaatctataaatacacttactat 108  Q
    |||||||||||||| ||| ||||| |||| ||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| || |    
T  27514591 accttatccctatgctctctatccatcaaacccttcaataatagtttctcttgaaatttggttctgagagaacttcaaaatctataaatacacttcctct 27514690  T
Q  109 ctccttcactaacagcacaaatcattg-catcatcaaaaatttagtta-------cttccttcttacatttgagannnnnnnct-gtacttctctcgaac 199  Q
    |||||||| ||| ||||||| |||||| |||||||||  |||||||||       | ||||||||||||||||||        | || |||||||| |||    
T  27514691 ctccttca-taa-agcacaactcattggcatcatcaagtatttagttaaaacttacatccttcttacatttgagattttttatttgttcttctctcaaac 27514788  T
Q  200 aataacaaaaaatgggtttccgtttacacactattctaaagggttcagtaacttctagtcaagcaaaattaaaatctgtagaagtgagaaagggctacgt 299  Q
    ||||||||||||||||||| |||||| || |||||||||  || || |||||  |||| ||||||| || ||||||||||||||||||||||||||| ||    
T  27514789 aataacaaaaaatgggttttcgtttaaactctattctaagaggatcggtaacagctagacaagcaacatcaaaatctgtagaagtgagaaagggctatgt 27514888  T
Q  300 tgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagag 399  Q
    ||| |||||||||||||||||||||  ||||||  |||| ||||||||||| ||||| ||||||||||||||||||||||||| |||| | ||||||||     
T  27514889 tgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaa 27514988  T
Q  400 tttggatatgatcatccaatggg 422  Q
    ||||||||||||||||| |||||    
T  27514989 tttggatatgatcatcccatggg 27515011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 3 - 422
Target Start/End: Complemental strand, 27476009 - 27475599
Alignment:
Q  3 catgctaccttatccctatgatctatatccttcaaccccatcaataatagtttttcttggaatttggttttgagagaacttcaaaatctataaatacact 102  Q
    ||||||||||||||||| || ||| ||||| |||| ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27476009 catgctaccttatccctgtgctctctatccatcaaacccttcaataatagtttctcttgaaatttggttttgagagaacttcaaaatctataaatacact 27475910  T
Q  103 tactatctccttcactaacagcacaaatcattg-catcatcaaaaatttagttacttccttcttacatttgagannnnnnnct-gtacttctctcgaaca 200  Q
    | || |||||||||  |||||||||| | |||| |||||||||| ||||||||||           ||||||||        | ||  ||||||| ||||    
T  27475909 tcctctctccttcataaacagcacaactgattggcatcatcaaatatttagttac-----------atttgagattttttatttgtttttctctcaaaca 27475821  T
Q  201 ataacaaaaaatgggtttccgtttacacactattctaaagggttcagtaacttctagtcaagcaaaattaaaatctgtagaagtgagaaagggctacgtt 300  Q
    ||||||||||||||||||||||||| || |||||||||  || || |||||  |||| ||| ||| || |||||| |||||||||| ||||||||| |||    
T  27475820 ataacaaaaaatgggtttccgtttaaactctattctaagaggatcggtaacagctagacaaacaacatcaaaatcagtagaagtgaaaaagggctatgtt 27475721  T
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    || |||||||||||||||||| || |||||||  |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  27475720 gccgtgtatgttggagagaaattggcgcggtttgtagttcctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagt 27475621  T
Q  401 ttggatatgatcatccaatggg 422  Q
    |||||||||||||||| |||||    
T  27475620 ttggatatgatcatcccatggg 27475599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 9 - 422
Target Start/End: Complemental strand, 27468770 - 27468347
Alignment:
Q  9 accttatccctatgatctatatccttcaaccccatcaataatagtttttcttggaatttggttttgagagaacttcaaaatctataaatacacttactat 108  Q
    |||||||||||||| ||| ||||| |||| ||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| || |    
T  27468770 accttatccctatgctctctatccatcaaacccttcaataatagtttttgttgaaatttgattttgagagaacttcaaaatctataaatacacttcctct 27468671  T
Q  109 ctccttcactaacagcacaaatcattg-catcatcaaaaatttagtt-------acttccttcttacatttgagannnnnnnct-gtacttctctcgaac 199  Q
    | ||||||| ||||| |||| |||||| |||||||||| ||||||||       || ||||| ||||||||||||        | || |||||||| |||    
T  27468670 cgccttcacaaacaggacaactcattggcatcatcaaatatttagtttcaacttacatcctttttacatttgagattttttatttgttcttctctcaaac 27468571  T
Q  200 aataacaaaaaa-tgggtttccgtttacacactattctaaagggttcagtaacttctagtcaagcaaaattaaaatctgtagaagtgagaaagggctacg 298  Q
    |||||||||||| ||||||||| |||  || |||||||||  || || |||||  |||| ||||||| || ||||||||||||||||||||||||||| |    
T  27468570 aataacaaaaaaatgggtttccatttcaactctattctaagaggatcggtaacagctagacaagcaacatcaaaatctgtagaagtgagaaagggctatg 27468471  T
Q  299 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 398  Q
    |||| |||||||||||||||||||||  ||||||  |||| ||||||||||| || |||||||||||||||||||||||||||| |||| | ||||||||    
T  27468470 ttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaaga 27468371  T
Q  399 gtttggatatgatcatccaatggg 422  Q
     ||||||||||||||||| |||||    
T  27468370 atttggatatgatcatcccatggg 27468347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 188 - 416
Target Start/End: Complemental strand, 27497576 - 27497348
Alignment:
Q  188 cttctctcgaacaataacaaaaaatgggtttccgtttacacactattctaaagggttcagtaacttctagtcaagcaaaattaaaatctgtagaagtgag 287  Q
    |||||||| ||||| ||| |||||||||||||||||||||  ||| ||||| ||  ||||||||| |||| ||||||  || |||||||||||||||       
T  27497576 cttctctcaaacaagaactaaaaatgggtttccgtttacatgctactctaagggcatcagtaactgctagacaagcatcatcaaaatctgtagaagttcc 27497477  T
Q  288 aaagggctacgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaa 387  Q
    ||||||||| |||||||||||||||||||| ||||  | ||||||  |  | ||| | ||||| || |||||||| |  |||||| | ||||||| ||||    
T  27497476 aaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgttgagtcaa 27497377  T
Q  388 gctgaggaagagtttggatatgatcatcc 416  Q
    |||||||||||||||||||||||||||||    
T  27497376 gctgaggaagagtttggatatgatcatcc 27497348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 270 - 422
Target Start/End: Original strand, 27489928 - 27490080
Alignment:
Q  270 aaaatctgtagaagtgagaaagggctacgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcattt 369  Q
    |||||| | |||||| ||||||||||| |||| ||||||||||||||||||||  |  |||||  |||| ||||| ||||| || ||| |||| ||||||    
T  27489928 aaaatcagcagaagtaagaaagggctatgttgtagtgtatgttggagagaaacaaaaacggtttgtagtccctgtgtcatacttaaacaaaccatcattt 27490027  T
Q  370 caagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  27490028 caagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatggg 27490080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 422
Target Start/End: Original strand, 27420376 - 27420528
Alignment:
Q  270 aaaatctgtagaagtgagaaagggctacgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcattt 369  Q
    ||||||||| || |||  |||||| ||  ||||||| |||||||||||||||| ||||||||   || | || |||||||| |||| |||||||||||||    
T  27420376 aaaatctgtggacgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatttaatccccgtatcatacttgagccaaccttcattt 27420475  T
Q  370 caagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    |||| |||| ||| ||||| ||||||||||||||||||||||||||| |||||    
T  27420476 caaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatggg 27420528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 299 - 422
Target Start/End: Complemental strand, 27570192 - 27570069
Alignment:
Q  299 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 398  Q
    ||||||| |||||||||||||||| ||||||||   |  | || |||||||| || | |||||||||||||||||||||| ||| |||||||||||||||    
T  27570192 ttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaaga 27570093  T
Q  399 gtttggatatgatcatccaatggg 422  Q
    ||| |||||||||||||| |||||    
T  27570092 gttcggatatgatcatcccatggg 27570069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 27412706 - 27412784
Alignment:
Q  344 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||||| ||||||||||| | |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  27412706 tatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatggg 27412784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 27415663 - 27415733
Alignment:
Q  344 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcat 414  Q
    ||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||    
T  27415663 tatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcat 27415733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 301 - 418
Target Start/End: Complemental strand, 27526253 - 27526136
Alignment:
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    ||||||||||||||||||||| ||| ||||||  |  ||||||||||||| ||||||||| | ||||| ||||| |||||||  |||||||||||| | |    
T  27526253 gcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaagctgaggaacaat 27526154  T
Q  401 ttggatatgatcatccaa 418  Q
    ||| ||||||||||||||    
T  27526153 ttgaatatgatcatccaa 27526136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 27425854 - 27425932
Alignment:
Q  344 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||||| ||||||||||| |||||||||||||| |||| ||||  ||||||||||||||||||||||||||| |||||    
T  27425854 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatggg 27425932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 422
Target Start/End: Complemental strand, 27479037 - 27478903
Alignment:
Q  288 aaagggctacgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaa 387  Q
    ||||||||| ||||||||||||||||||||||||| || ||||||  | || ||  ||||||| ||||||||||| |  |||||||| ||| |  |||||    
T  27479037 aaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaa 27478938  T
Q  388 gctgaggaagagtttggatatgatcatccaatggg 422  Q
    || || ||||| ||||||||||||||||| |||||    
T  27478937 gcggaagaagaatttggatatgatcatcccatggg 27478903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 422
Target Start/End: Complemental strand, 27486097 - 27485963
Alignment:
Q  288 aaagggctacgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaa 387  Q
    ||||||||| ||||||||||||||||||||||||| || ||||||  | || ||  ||||||| ||||||||||| |  |||||||| ||| |  |||||    
T  27486097 aaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaa 27485998  T
Q  388 gctgaggaagagtttggatatgatcatccaatggg 422  Q
    || || ||||| ||||||||||||||||| |||||    
T  27485997 gcggaagaagaatttggatatgatcatcccatggg 27485963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 422
Target Start/End: Complemental strand, 27424655 - 27424534
Alignment:
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    ||||| |||||||||||  || ||| ||||||  |  |||| |||||||| ||||||||||||||||||||||| ||| | |||||| |||| ||||| |    
T  27424655 gcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaat 27424556  T
Q  401 ttggatatgatcatccaatggg 422  Q
     |||||||||||||||||||||    
T  27424555 atggatatgatcatccaatggg 27424534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 422
Target Start/End: Complemental strand, 27505843 - 27505722
Alignment:
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    |||||||| || ||||||||| ||| ||||||  |  ||||||||||||| ||||||||| | ||||| ||||| |||||||| |||||||||||| | |    
T  27505843 gcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaaccaagctgaggaacaat 27505744  T
Q  401 ttggatatgatcatccaatggg 422  Q
    ||| |||||| |||||||||||    
T  27505743 ttgaatatgaccatccaatggg 27505722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 27423264 - 27423342
Alignment:
Q  344 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||||| ||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||  ||||||| |||||    
T  27423264 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatggg 27423342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 418
Target Start/End: Complemental strand, 27431246 - 27431172
Alignment:
Q  344 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaa 418  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||||| |||||| | ||||||||||| |||||||    
T  27431246 tatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaa 27431172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 422
Target Start/End: Complemental strand, 27523557 - 27523423
Alignment:
Q  288 aaagggctacgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaa 387  Q
    |||||||||  | |||||||| || ||||||||| ||| ||||||  |  ||||||||||||||||||||||| ||||||| ||||| |||||||   ||    
T  27523557 aaagggctatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaattgttgagcgaa 27523458  T
Q  388 gctgaggaagagtttggatatgatcatccaatggg 422  Q
    || |||||| | |||| |||||| |||||||||||    
T  27523457 gccgaggaacaatttgaatatgaccatccaatggg 27523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 27414408 - 27414324
Alignment:
Q  338 ttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||||||||||| ||||||||||| ||||||||||| ||  | |||||| | || ||||| |||||||||||||||||||||||    
T  27414408 ttcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatggg 27414324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 422
Target Start/End: Original strand, 27479937 - 27480021
Alignment:
Q  338 ttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||||||||||| ||||||||| | ||||| ||| | |||||||| |||||||||||| | |||| ||||||||||||||||||    
T  27479937 ttcctgtatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgaggaacaatttgaatatgatcatccaatggg 27480021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 27502903 - 27502827
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||||||||| ||| ||||||||||||||||| |||  ||||||| |||||| ||||||||||| |||||||||||    
T  27502903 tcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatggg 27502827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 27585729 - 27585808
Alignment:
Q  343 gtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    |||||||| ||||||||||| |  |||||||| ||| ||| |||||| || |||||||||||||||||||||||||||||    
T  27585729 gtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatggg 27585808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 27486982 - 27487103
Alignment:
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    |||||||| || ||||||||| ||| ||||||  |  | ||| ||||||| || |||||||| || |||||||| |||||||| |||||||| ||| | |    
T  27486982 gcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaaccaagctgaagaacaat 27487081  T
Q  401 ttggatatgatcatccaatggg 422  Q
    ||| ||||||||||||||||||    
T  27487082 ttgaatatgatcatccaatggg 27487103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 27557533 - 27557609
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| || |||||||| ||||||||||| ||| ||||||||||||||||| | |||| ||||| ||||||||||||    
T  27557533 tcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatggg 27557609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 27527214 - 27527281
Alignment:
Q  355 aaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    |||||||| || |||| ||| ||| ||| ||||||||||||||||||||||||||||||||| |||||    
T  27527214 aaccaaccatcgtttctagagttgctgagtcaagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 27563445 - 27563366
Alignment:
Q  343 gtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    |||||||| ||||||||| | |  |||||||| ||| ||| |||||| || |||||||||||||||||||||||||||||    
T  27563445 gtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatggg 27563366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 27498457 - 27498535
Alignment:
Q  344 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||||| ||||||||||| || || |||||||||||||| ||||| |||||| | || | ||||||||||||||||||    
T  27498457 tatcatacttgaaccaaccatcgttccaagacttgttgaaccaagccgaggaacaattcgaatatgatcatccaatggg 27498535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 422
Target Start/End: Complemental strand, 27411597 - 27411476
Alignment:
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    ||||| ||||||||||| | | |||  |||||| |  |||| |||||||| ||||||||||| || |||||||| ||  | |||||||| || ||||| |    
T  27411597 gcagtctatgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaat 27411498  T
Q  401 ttggatatgatcatccaatggg 422  Q
    |||||||||||||||| |||||    
T  27411497 ttggatatgatcatcctatggg 27411476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 422
Target Start/End: Complemental strand, 27419212 - 27419091
Alignment:
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    ||||| ||||||||||| | | ||| ||||||| |  |||| ||||||||||||| ||| || || |||||||| ||  | |||||| | || ||||| |    
T  27419212 gcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaat 27419113  T
Q  401 ttggatatgatcatccaatggg 422  Q
    ||||||||||||||||||||||    
T  27419112 ttggatatgatcatccaatggg 27419091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 27476686 - 27476807
Alignment:
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    |||||||||||||| |||||| ||| ||||||  |  ||||||||||||| ||||||||| | ||||| |||||  || |||  |||  ||||||| | |    
T  27476686 gcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagccaaagtgaggaacaat 27476785  T
Q  401 ttggatatgatcatccaatggg 422  Q
    ||| ||||||||||||||||||    
T  27476786 ttgaatatgatcatccaatggg 27476807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 27554364 - 27554425
Alignment:
Q  357 ccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaa 418  Q
    |||||| || |||||||| ||| ||||||||||||||||| | |||||||||||||||||||    
T  27554364 ccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaa 27554425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 27571622 - 27571743
Alignment:
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    ||||| ||||||||||| | | ||| ||||||| |  |||| ||||||||||||| ||| || || |||||||| ||  | |||||| | || ||||| |    
T  27571622 gcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaat 27571721  T
Q  401 ttggatatgatcatccaatggg 422  Q
    ||||||||||||||||||||||    
T  27571722 ttggatatgatcatccaatggg 27571743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 422
Target Start/End: Complemental strand, 27566094 - 27565971
Alignment:
Q  299 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 398  Q
    ||||||||||||||||||||||||  | ||| ||  |  | ||  |||||||  |||||||||| |  |||||||||||| |||  |||| |||||||||    
T  27566094 ttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatacaagttgaggaaga 27565995  T
Q  399 gtttggatatgatcatccaatggg 422  Q
    |  |||||||||||||||||||||    
T  27565994 gcatggatatgatcatccaatggg 27565971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 422
Target Start/End: Complemental strand, 27444892 - 27444814
Alignment:
Q  344 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||||| |||| |||| | ||||||||||| || ||||||||||| |||||| | || |||||||| |||||||||||    
T  27444892 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatggg 27444814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 422
Target Start/End: Complemental strand, 27516707 - 27516629
Alignment:
Q  344 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||||||||||| |||   ||||| ||||| |||||||| |||||||||||| | |||| |||||| |||||||||||    
T  27516707 tatcatatttgaagcaaaaatcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatggg 27516629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 422
Target Start/End: Complemental strand, 27513917 - 27513796
Alignment:
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    ||||||||||| ||||||||| ||| ||||||  |  | ||  ||||||| ||||||||| | || || ||||| |||||||| |||||||| ||| | |    
T  27513917 gcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaaccaagctgaagaacaat 27513818  T
Q  401 ttggatatgatcatccaatggg 422  Q
     || ||||||||||||||||||    
T  27513817 atgaatatgatcatccaatggg 27513796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 27567254 - 27567375
Alignment:
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    ||||| ||||||||||| | | |||  |||||| |  |||| |||||||| ||||||||||| || |||||||| ||  | |||||| | || ||||| |    
T  27567254 gcagtctatgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaat 27567353  T
Q  401 ttggatatgatcatccaatggg 422  Q
    |||| |||||||||||||||||    
T  27567354 ttggttatgatcatccaatggg 27567375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 17970343 - 17970419
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| ||||||||| ||||||||||| ||||| ||| ||  || |||||||| || ||||| ||||||||||||||    
T  17970343 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatggg 17970419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 27502207 - 27502155
Alignment:
Q  370 caagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| |||||||| |||||||||||| | |||| ||||||||||||||||||    
T  27502207 caagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatggg 27502155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 381
Target Start/End: Original strand, 27945687 - 27945722
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttg 381  Q
    ||||| ||||||||||||||||||||||||||||||    
T  27945687 tcatacttgaaccaaccttcatttcaagacttgttg 27945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 418
Target Start/End: Original strand, 27501359 - 27501433
Alignment:
Q  344 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaa 418  Q
    ||||||| || |||||||| |  ||||||||||||||||| ||||| |||||| | |||| ||| ||||||||||    
T  27501359 tatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaa 27501433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 414
Target Start/End: Complemental strand, 27556469 - 27556407
Alignment:
Q  352 ttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcat 414  Q
    ||||||||||||||||||||||| ||  |  ||||||| || ||||| |||||||||||||||    
T  27556469 ttgaaccaaccttcatttcaagaattactacatcaagcagaagaagaatttggatatgatcat 27556407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 27469459 - 27469580
Alignment:
Q  301 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 400  Q
    |||||||| || ||||||||| ||| ||||||  |  | ||| ||||||||||||| ||| | ||||| |||||  ||||||  |||||||| ||| | |    
T  27469459 gcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagccaagctgaagaacaat 27469558  T
Q  401 ttggatatgatcatccaatggg 422  Q
    ||| |||||| |||||||||||    
T  27469559 ttgaatatgaacatccaatggg 27469580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 422
Target Start/End: Complemental strand, 27559288 - 27559260
Alignment:
Q  394 gaagagtttggatatgatcatccaatggg 422  Q
    |||||||||||||||||||||||||||||    
T  27559288 gaagagtttggatatgatcatccaatggg 27559260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 50910004 - 50910080
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||  |||||||| |||||||||||||||||||||||    
T  50910004 tcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatggg 50910080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 422
Target Start/End: Original strand, 55084783 - 55084906
Alignment:
Q  299 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 398  Q
    ||||||||||||||||||||||| ||| ||||||  |  | ||| | || || ||||||||||| ||||||||||||||||||| ||  || ||||||||    
T  55084783 ttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaaga 55084882  T
Q  399 gtttggatatgatcatccaatggg 422  Q
     |||||||| ||||||||||||||    
T  55084883 atttggatacgatcatccaatggg 55084906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 50911965 - 50911889
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| ||||||||| ||||||||||| ||||||||| |||||| |||||||| |||||||||||||| ||||||||    
T  50911965 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagcagaggaagaatttggatatgatcacccaatggg 50911889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 38033875 - 38033802
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaat 419  Q
    ||||| ||||||||| ||||||||||| ||||||||| |||||| |||||||| ||||||||||| ||||||||    
T  38033875 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaatttggatatgaccatccaat 38033802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 38028862 - 38028786
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| ||||||||| ||||||||||| || |||||| |||||| |||||||| ||||||||||| |||||||||||    
T  38028862 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaatttggatatgaccatccaatggg 38028786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 38043947 - 38044023
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| ||||| ||| |||| |||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||    
T  38043947 tcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatggg 38044023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 422
Target Start/End: Complemental strand, 38025029 - 38024895
Alignment:
Q  288 aaagggctacgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaa 387  Q
    |||||||||  ||||||| |||||||||||| || ||| ||||||  |  | ||  | ||||| ||||||||| |||| |||||| |||| |||| ||||    
T  38025029 aaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaa 38024930  T
Q  388 gctgaggaagagtttggatatgatcatccaatggg 422  Q
    || |||||||| |||||||||||||| ||||||||    
T  38024929 gcagaggaagaatttggatatgatcacccaatggg 38024895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 422
Target Start/End: Complemental strand, 38031481 - 38031347
Alignment:
Q  288 aaagggctacgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaa 387  Q
    |||||||||  ||||||| |||||||||||| || ||| ||||||  |  | ||  | ||||| ||||||||| |||| |||||| |||| |||| ||||    
T  38031481 aaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaa 38031382  T
Q  388 gctgaggaagagtttggatatgatcatccaatggg 422  Q
    || |||||||| |||||||||||||| ||||||||    
T  38031381 gcagaggaagaatttggatatgatcacccaatggg 38031347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 50904882 - 50904812
Alignment:
Q  352 ttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||||||| ||||||||||||||||||||| || ||| ||||| || || ||||||||||||||||||||    
T  50904882 ttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatggg 50904812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 38040177 - 38040101
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| ||||||||| ||||||||||| || |||||| |||||| |||||||| || |||||||| |||||||||||    
T  38040177 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaattcggatatgaccatccaatggg 38040101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 38036888 - 38036813
Alignment:
Q  347 catatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    |||| ||||||||| ||||||||||| | ||||||| |||||| |||||||| || |||||||| |||||||||||    
T  38036888 catacttgaaccaagcttcatttcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatggg 38036813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 48840806 - 48840732
Alignment:
Q  347 catatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    |||| ||||||||| | ||||||||||||||||||| | |||  ||| |||| |||||||||||||||||||||||    
T  48840806 catacttgaaccaagcctcatttcaagacttgttgagt-aagtggagaaagaatttggatatgatcatccaatggg 48840732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 422
Target Start/End: Complemental strand, 1756911 - 1756777
Alignment:
Q  288 aaagggctacgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaa 387  Q
    |||||||||  |||||||| ||||||||||||||| || ||||||  |  | ||  ||||||| ||||||||||| || |||||| ||||||||| ||||    
T  1756911 aaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtcaa 1756812  T
Q  388 gctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| ||||| |||||||||||||| || |||||    
T  1756811 gctgaagaagaatttggatatgatcaccccatggg 1756777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 1754730 - 1754808
Alignment:
Q  344 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||||| ||||| ||||| || ||||||  |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  1754730 tatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgcggaagagtttggatatgatcatccaatggg 1754808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 21604850 - 21604774
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| ||||||||| ||||||||||| || |||||| |||||  |||||||| || |||||||| |||||||||||    
T  21604850 tcatacttgaaccaagcttcatttcaaaacatgttgagtcaagacgaggaagaattaggatatgaccatccaatggg 21604774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 21607392 - 21607316
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| ||||||| | |||| |||||| |||| |||| |||||| |||||||| |||||||||||||| ||||||||    
T  21607392 tcatacttgaaccgagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatggg 21607316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 21634603 - 21634663
Alignment:
Q  362 cttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    |||| |||||||||||| ||| |||||| |||||||| |||||||||||||||| ||||||    
T  21634603 cttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatggg 21634663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 3073613 - 3073689
Alignment:
Q  346 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatggg 422  Q
    ||||| ||||||||| ||||||||||| ||||| ||| ||  || |||||||| || ||||| ||||||||||||||    
T  3073613 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatggg 3073689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 21477526 - 21477489
Alignment:
Q  289 aagggctacgttgcagtgtatgttggagagaaactgac 326  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  21477526 aagggctatgttgcagtgtatgttggagagaaaatgac 21477489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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