View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2716_high_8 (Length: 250)

Name: NF2716_high_8
Description: NF2716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2716_high_8
NF2716_high_8
[»] chr7 (25 HSPs)
chr7 (9-250)||(25533154-25533395)
chr7 (51-249)||(46201140-46201338)
chr7 (44-152)||(38539672-38539780)
chr7 (39-250)||(9662146-9662356)
chr7 (44-147)||(27755-27858)
chr7 (44-147)||(35105-35208)
chr7 (44-153)||(46202289-46202398)
chr7 (100-156)||(9660730-9660786)
chr7 (145-250)||(40811422-40811529)
chr7 (167-250)||(35295823-35295907)
chr7 (167-250)||(44372853-44372937)
chr7 (167-250)||(44381709-44381793)
chr7 (44-91)||(9660122-9660169)
chr7 (144-235)||(47060400-47060490)
chr7 (161-235)||(22115088-22115162)
chr7 (161-235)||(40509658-40509732)
chr7 (178-250)||(43460730-43460803)
chr7 (167-250)||(669297-669380)
chr7 (144-250)||(32255090-32255199)
chr7 (167-249)||(2414869-2414952)
chr7 (144-250)||(47059209-47059319)
chr7 (186-250)||(22537703-22537768)
chr7 (146-206)||(33779040-33779100)
chr7 (156-212)||(43441459-43441515)
chr7 (167-250)||(47454460-47454544)
[»] chr2 (21 HSPs)
chr2 (44-250)||(35903509-35903715)
chr2 (45-250)||(34463970-34464176)
chr2 (55-179)||(37956961-37957084)
chr2 (44-250)||(7753435-7753640)
chr2 (44-250)||(34513461-34513668)
chr2 (44-153)||(33995949-33996057)
chr2 (64-250)||(11547680-11547868)
chr2 (39-130)||(35061345-35061435)
chr2 (39-153)||(35904749-35904863)
chr2 (44-189)||(34147137-34147282)
chr2 (44-153)||(34148366-34148475)
chr2 (39-127)||(30749325-30749413)
chr2 (54-189)||(2277439-2277574)
chr2 (44-242)||(34512815-34513012)
chr2 (172-250)||(28611161-28611239)
chr2 (144-250)||(34467607-34467714)
chr2 (44-91)||(37956919-37956966)
chr2 (178-250)||(6030377-6030450)
chr2 (178-250)||(32469285-32469358)
chr2 (161-243)||(43033199-43033282)
chr2 (44-153)||(2276282-2276391)
[»] chr1 (33 HSPs)
chr1 (44-250)||(46318526-46318732)
chr1 (44-250)||(15746675-15746881)
chr1 (39-250)||(46467142-46467353)
chr1 (35-121)||(10722416-10722502)
chr1 (161-250)||(35943354-35943445)
chr1 (44-227)||(48096964-48097146)
chr1 (52-147)||(20069899-20069994)
chr1 (44-153)||(15743277-15743386)
chr1 (35-118)||(10711778-10711861)
chr1 (44-140)||(42244632-42244728)
chr1 (69-243)||(16123313-16123488)
chr1 (44-122)||(7161396-7161474)
chr1 (161-250)||(41873879-41873969)
chr1 (167-227)||(3617429-3617489)
chr1 (167-250)||(12665915-12665998)
chr1 (39-147)||(20064172-20064280)
chr1 (167-250)||(48527658-48527742)
chr1 (175-250)||(52078052-52078128)
chr1 (172-246)||(41872705-41872780)
chr1 (63-122)||(42245924-42245983)
chr1 (69-250)||(45584915-45585099)
chr1 (44-122)||(46468756-46468834)
chr1 (176-250)||(24517525-24517600)
chr1 (176-250)||(40109491-40109566)
chr1 (167-250)||(5612993-5613076)
chr1 (167-250)||(26286536-26286619)
chr1 (143-248)||(16965035-16965143)
chr1 (176-250)||(26802073-26802148)
chr1 (56-122)||(24499692-24499758)
chr1 (145-250)||(46110384-46110489)
chr1 (56-116)||(835258-835318)
chr1 (175-235)||(9633904-9633964)
chr1 (55-91)||(16963846-16963882)
[»] chr4 (29 HSPs)
chr4 (44-250)||(53432063-53432270)
chr4 (37-250)||(28590812-28591027)
chr4 (46-250)||(53435661-53435866)
chr4 (44-227)||(40723228-40723411)
chr4 (39-250)||(13533170-13533380)
chr4 (44-155)||(38698032-38698143)
chr4 (44-183)||(40724820-40724957)
chr4 (167-250)||(56085471-56085555)
chr4 (142-250)||(1794510-1794621)
chr4 (142-250)||(6348254-6348362)
chr4 (100-156)||(13531754-13531810)
chr4 (44-152)||(28589782-28589890)
chr4 (142-250)||(13165594-13165703)
chr4 (172-246)||(42810115-42810190)
chr4 (69-231)||(52963595-52963756)
chr4 (44-153)||(38695544-38695653)
chr4 (178-250)||(52240013-52240086)
chr4 (44-91)||(13531146-13531193)
chr4 (44-122)||(668387-668465)
chr4 (166-250)||(8682756-8682841)
chr4 (176-250)||(41349436-41349511)
chr4 (144-250)||(13166677-13166784)
chr4 (156-250)||(26629904-26629998)
chr4 (215-250)||(54866559-54866594)
chr4 (178-250)||(27850845-27850918)
chr4 (167-250)||(1519935-1520018)
chr4 (145-189)||(11438538-11438582)
chr4 (44-88)||(14524216-14524260)
chr4 (158-248)||(15449984-15450078)
[»] scaffold2071 (1 HSPs)
scaffold2071 (44-250)||(589-796)
[»] scaffold0011 (2 HSPs)
scaffold0011 (44-246)||(127434-127637)
scaffold0011 (44-153)||(128597-128706)
[»] chr8 (28 HSPs)
chr8 (44-250)||(42877620-42877825)
chr8 (39-250)||(14840807-14841019)
chr8 (39-188)||(41743586-41743735)
chr8 (44-250)||(38696309-38696516)
chr8 (52-189)||(45394976-45395113)
chr8 (161-250)||(22551124-22551214)
chr8 (32-153)||(38697012-38697133)
chr8 (44-185)||(28734989-28735132)
chr8 (161-250)||(8571524-8571614)
chr8 (167-250)||(10669353-10669437)
chr8 (39-116)||(42878859-42878936)
chr8 (39-179)||(45437462-45437602)
chr8 (69-250)||(32798439-32798622)
chr8 (155-250)||(42870924-42871023)
chr8 (56-189)||(17702243-17702378)
chr8 (167-250)||(20180582-20180666)
chr8 (167-250)||(24192571-24192655)
chr8 (172-250)||(9854787-9854866)
chr8 (57-236)||(42872113-42872291)
chr8 (158-250)||(31845703-31845795)
chr8 (155-250)||(32695181-32695280)
chr8 (65-122)||(41742089-41742146)
chr8 (215-250)||(6398425-6398460)
chr8 (215-250)||(17339477-17339512)
chr8 (56-122)||(34504677-34504743)
chr8 (167-250)||(6397906-6397990)
chr8 (167-250)||(13366961-13367045)
chr8 (167-250)||(30786801-30786885)
[»] chr5 (18 HSPs)
chr5 (44-250)||(8521256-8521461)
chr5 (44-250)||(1010274-1010479)
chr5 (44-250)||(9169587-9169793)
chr5 (39-175)||(8523731-8523866)
chr5 (44-154)||(1009185-1009295)
chr5 (39-189)||(32757821-32757971)
chr5 (167-250)||(1102742-1102826)
chr5 (44-147)||(26047814-26047917)
chr5 (161-250)||(22308707-22308797)
chr5 (39-153)||(32759054-32759168)
chr5 (144-250)||(33173867-33173975)
chr5 (178-250)||(27705223-27705296)
chr5 (156-250)||(30859078-30859176)
chr5 (57-91)||(22047746-22047780)
chr5 (54-107)||(11846323-11846376)
chr5 (167-227)||(324163-324223)
chr5 (167-250)||(325094-325178)
chr5 (156-250)||(39603965-39604063)
[»] chr3 (13 HSPs)
chr3 (44-250)||(3455533-3455740)
chr3 (144-250)||(42684977-42685084)
chr3 (166-250)||(53420440-53420525)
chr3 (65-192)||(28909574-28909699)
chr3 (43-243)||(20288139-20288340)
chr3 (39-153)||(43174712-43174826)
chr3 (167-250)||(10301058-10301142)
chr3 (65-196)||(24403261-24403392)
chr3 (59-122)||(55328342-55328405)
chr3 (167-243)||(48083351-48083428)
chr3 (65-250)||(3208506-3208693)
chr3 (167-250)||(14745108-14745192)
chr3 (44-120)||(43173887-43173963)
[»] scaffold0031 (2 HSPs)
scaffold0031 (144-250)||(124070-124175)
scaffold0031 (144-250)||(125138-125248)
[»] scaffold1251 (1 HSPs)
scaffold1251 (44-189)||(1055-1200)
[»] chr6 (13 HSPs)
chr6 (161-250)||(32505786-32505876)
chr6 (52-152)||(16208533-16208633)
chr6 (44-91)||(7308515-7308562)
chr6 (178-250)||(7311632-7311705)
chr6 (215-250)||(6702799-6702834)
chr6 (44-91)||(7308354-7308401)
chr6 (161-250)||(17837732-17837825)
chr6 (161-250)||(29381637-29381730)
chr6 (44-126)||(12784707-12784789)
chr6 (144-206)||(32506979-32507041)
chr6 (145-218)||(12669825-12669898)
chr6 (186-250)||(18346657-18346722)
chr6 (142-182)||(1367510-1367550)
[»] scaffold0118 (1 HSPs)
scaffold0118 (155-250)||(43481-43580)
[»] scaffold0013 (1 HSPs)
scaffold0013 (54-250)||(32583-32780)
[»] scaffold0201 (1 HSPs)
scaffold0201 (161-250)||(21245-21335)
[»] scaffold0004 (1 HSPs)
scaffold0004 (66-112)||(334150-334196)
[»] scaffold0001 (1 HSPs)
scaffold0001 (66-112)||(44857-44903)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 25533154 - 25533395
Alignment:
Q  9 gagatgaaggaagaataagaaataagaaaaaaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaag 108  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||     
T  25533154 gagatgaaggaagaataagaaataagaaaaagggcttaataagtcatttggtctcttaattaatttcaagttttcattttggtcccataactaataaaat 25533253  T
Q  109 tcatgttttggtcctttaattgtatctccgtcggtcaaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgat 208  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||| |||||||||||||||| ||| |    
T  25533254 tcatgttttggtccttcaattgtatctccgtcggtcaaataaatctctgactgttaagtttaaccccaaatgcttatagtgaactaactttaagggtggt 25533353  T
Q  209 ccactatagaccttattaaatttttaatttaaaccgtttgat 250  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  25533354 ccactatagaccttattaaatctttaatttaaaccgtttgat 25533395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 249
Target Start/End: Original strand, 46201140 - 46201338
Alignment:
Q  51 gtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataa 150  Q
    ||||||||||||| |||| | ||||| ||||||||||||||  | ||| |||||||| |||||||||| |||||||||||| | |||||||| |||||||    
T  46201140 gtcatttggtctcataataattttca-gttttcattttggtcccataagtaataaaactcatgttttgatcctttaattgtgtttccgtcggccaaataa 46201238  T
Q  151 atctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttga 249  Q
    |||   | | |||| ||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||| | |||||| | ||||||| ||||| ||||||    
T  46201239 atccaagcctgttaagtttaaccccaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatataaactgtttga 46201338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 38539672 - 38539780
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| |||||||| || |||||||||||||||||||||||||||||  | ||| |||||||| |||||||||||||| |||||||| |||||||||||    
T  38539672 ttaataggtcatttgatcccttaattaatttcaagttttcattttggtcccataaataataaaactcatgttttggtcccttaattgtctctccgtcggt 38539771  T
Q  144 caaataaat 152  Q
    |||| ||||    
T  38539772 caaaaaaat 38539780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 9662356 - 9662146
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| |||||| |||||||||||   ||||||||||||||||||||| || ||| | ||||||| |||| |||||||||||||| | |  | | ||||||    
T  9662356 aaggcttaataggtcatttggtcctctaattaatttcaagttttcatcttagttccataactaaaaaaactcatgttttggtccctcacgtttgtctccg 9662257  T
Q  139 tcggtcaaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaacttta-agagtgatccactatagaccttattaaatttttaatt 237  Q
    ||||||||||||||| | ||| ||||  ||||||  ||||||||||||||| || ||| ||| ||| |  ||||| |||||||||||||| |||| ||||    
T  9662256 tcggtcaaataaatc-cagactgttaaatttaacttcaaatgtctatggtggaccaacattataga-tagtccaccatagaccttattaatttttcaatt 9662159  T
Q  238 taaaccgtttgat 250  Q
    | |||| ||||||    
T  9662158 ttaaccatttgat 9662146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 27755 - 27858
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| ||||| ||||||| | |||||||||||||| | || ||||||||||||||||||||||||||||| ||| | |||||| ||    
T  27755 ttaataggtcatttggtcccttaaataatttccaattttcattttggttccatatctaataaaagtcatgttttggtcctttaactgtgtatccgtctgt 27854  T
Q  144 caaa 147  Q
    ||||    
T  27855 caaa 27858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 35208 - 35105
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| ||||| ||||||| | |||||||||||||  | || ||||||||||||||||||||||||||||| ||| |||||||| ||    
T  35208 ttaataggtcatttggtcccttaaataatttccaattttcattttggtcccatatctaataaaagtcatgttttggtcctttaactgtgtctccgtctgt 35109  T
Q  144 caaa 147  Q
    ||||    
T  35108 caaa 35105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 46202398 - 46202289
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||| |||| || ||||| ||||||  ||||||||||||| |  | ||| |||||||| ||||||| ||||| ||||||||| |||||||||||    
T  46202398 ttaataggtcgtttgatcccttaaataatttacagttttcattttgatcccataagtaataaaactcatgttctggtcatttaattgtgtctccgtcggt 46202299  T
Q  144 caaataaatc 153  Q
    ||||||||||    
T  46202298 caaataaatc 46202289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 9660730 - 9660786
Alignment:
Q  100 taataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatctct 156  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  9660730 taataaaactcatgttttggtcctttaattgtctctccgtcggtcaaaaaaatctct 9660786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 40811422 - 40811529
Alignment:
Q  145 aaataaatctctgacggttacgtttaaccccaa--atgtctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaaa 241  Q
    ||||||||| ||||||||||  |||||||| ||  |||||||||||| || ||| ||||||||| ||||| |||||   |||||| ||||||||||||||    
T  40811422 aaataaatc-ctgacggttaactttaacccaaatgatgtctatggtggaccaaccttaagagtggtccaccatagattctattaatatttttaatttaaa 40811520  T
Q  242 ccgtttgat 250  Q
    |||||||||    
T  40811521 ccgtttgat 40811529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 35295823 - 35295907
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||||||||| ||| ||||| || ||| ||||||||| ||||| ||||| | |||||| | |||||||||||||||||||||    
T  35295823 tttaaccccaaatatctgtggtggaccaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 35295907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 44372853 - 44372937
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||||| |||||||||| ||| |||||| ||||||||| ||||| ||||| | |||||| | |||||||| ||||||||||||    
T  44372853 tttaaccctaaatgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgat 44372937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 44381709 - 44381793
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||||| |||||||||| ||| |||||| ||||||||| ||||| ||||| | |||||| | |||||||| ||||||||||||    
T  44381709 tttaaccctaaatgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgat 44381793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 9660122 - 9660169
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggt 91  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||    
T  9660122 ttaataggtcatttggacccttaattaatttcaagttttcattttggt 9660169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 47060490 - 47060400
Alignment:
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaa 235  Q
    |||||||||| | ||| |||| ||||||| |||||||| ||||||| || ||| |||||| |  ||||| ||||||||||||||||||||||    
T  47060490 caaataaatc-cggactgttaagtttaacaccaaatgtatatggtggaccaaccttaagaatagtccaccatagaccttattaaatttttaa 47060400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 22115162 - 22115088
Alignment:
Q  161 gttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaa 235  Q
    |||| |||||||||||||||||||| ||| || ||| ||||||||| ||||| |||||| | ||||| |||||||    
T  22115162 gttaagtttaaccccaaatgtctatagtggaccaaccttaagagtggtccaccatagacttcattaattttttaa 22115088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 40509732 - 40509658
Alignment:
Q  161 gttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaa 235  Q
    |||| |||||||||||||||||||| ||| || ||| ||||||||| ||||| |||||| | ||||| |||||||    
T  40509732 gttaagtttaaccccaaatgtctatagtggaccaaccttaagagtggtccaccatagacttcattaattttttaa 40509658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 43460803 - 43460730
Alignment:
Q  178 atgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||||||||| || ||||||||||||| ||||| ||||| | |||||| | |||||||||||||| ||||||    
T  43460803 atgtctatggtggaccaactttaagagtggtccaccatagatcctattaattattttaatttaaaccctttgat 43460730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 669380 - 669297
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattt-ttaatttaaaccgtttgat 250  Q
    ||||||| ||||||||||||||| || | ||| ||||||| ||||| ||||| | |||||| ||| |||||||||||||||||||    
T  669380 tttaacctcaaatgtctatggtggaccatctt-aagagtggtccaccatagatcctattaattttgttaatttaaaccgtttgat 669297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 32255090 - 32255199
Alignment:
Q  144 caaataaatctctgacggttacgtttaaccccaa---atgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaattta 239  Q
    |||||||||| | |||||||| ||||||||||||   |||| ||||||| || ||| ||||||||| ||||| ||||| | |||||| | |||||||||     
T  32255090 caaataaatccc-gacggttaagtttaaccccaaatgatgtttatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaatttc 32255188  T
Q  240 aaccgtttgat 250  Q
    |||||||||||    
T  32255189 aaccgtttgat 32255199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 2414869 - 2414952
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattt-ttaatttaaaccgtttga 249  Q
    |||||||||||||||||||  || || ||| |||| |||| ||||| ||||| | |||||| ||| ||||||||||||||||||    
T  2414869 tttaaccccaaatgtctataatggaccaaccttaaaagtggtccaccatagatcctattaattttcttaatttaaaccgtttga 2414952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 47059209 - 47059319
Alignment:
Q  144 caaataaatctctgacggttacgtttaaccc--caaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttt---taattt 238  Q
    |||||||||| ||||| |||| |||||||||  |||| |||||||||| |  ||| ||||||||   |||| |||||||||||||| ||||   ||||||    
T  47059209 caaataaatc-ctgaccgttaagtttaaccctccaaaagtctatggtggagcaaccttaagagtagcccaccatagaccttattaatttttttttaattt 47059307  T
Q  239 aaaccgtttgat 250  Q
    ||||||||||||    
T  47059308 aaaccgtttgat 47059319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 22537703 - 22537768
Alignment:
Q  186 ggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||| ||| |||| |||||||||| ||||| | |||||| | |||||||||||||||||||||    
T  22537703 ggtgaaccaaccttaatagtgatccaccatagatcctattaattattttaatttaaaccgtttgat 22537768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 33779100 - 33779040
Alignment:
Q  146 aataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtg 206  Q
    ||||||||| || | |||| |||||||| ||||||||||||||| || ||| |||||||||    
T  33779100 aataaatctttggctgttaagtttaaccacaaatgtctatggtggaccaaccttaagagtg 33779040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 43441459 - 43441515
Alignment:
Q  156 tgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccac 212  Q
    |||||||||  |||||||| |||||||||||||| || ||| ||||||||| |||||    
T  43441459 tgacggttaactttaaccctaaatgtctatggtgtaccaaccttaagagtggtccac 43441515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 47454460 - 47454544
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattt-ttaatttaaaccgtttgat 250  Q
    |||||| | |||||||||||||  || ||| ||||||||| ||||   ||||||||||||| ||| ||||||| |||||||||||    
T  47454460 tttaactctaaatgtctatggtagaccaaccttaagagtggtccatcgtagaccttattaattttattaattttaaccgtttgat 47454544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 35903509 - 35903715
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||| | |||| |||||||||| ||    
T  35903509 ttaataggtcatttggtcctttaattaatttcaagttttcattttggtcccataactaataaaagtcatgttttggtccctcaattatatctccgtcagt 35903608  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaac 242  Q
    ||||||||||  || | |||| ||||||||||||||||||||| | |  | ||||| |||||| ||||| ||||| | |||||||| |||||||||||||    
T  35903609 caaataaatccttggctgttaagtttaaccccaaatgtctatgat-agattacttttagagtggtccaccatagatcctattaaatattttaatttaaac 35903707  T
Q  243 cgtttgat 250  Q
    ||||||||    
T  35903708 cgtttgat 35903715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 250
Target Start/End: Original strand, 34463970 - 34464176
Alignment:
Q  45 taataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtc 144  Q
    ||||| ||||||||||| | ||||||||| | |||||||||||||||||  ||| ||||||||   || ||||||||| | |  | |  ||||||   ||    
T  34463970 taatatgtcatttggtcccctaattaattaccagttttcattttggtttgataattaataaaacaaatcttttggtccatcaggtttgcctccgttaatc 34464069  T
Q  145 aaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttatta-aatttttaatttaaacc 243  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||  || ||| ||||||||| ||||| ||||||||||||| | ||||||||||||||     
T  34464070 aaataaatctctgactgttaagtttaaccccaaatgtctatcgttgaccaaccttaagagtggtccaccatagaccttattagattttttaatttaaact 34464169  T
Q  244 gtttgat 250  Q
    |||||||    
T  34464170 gtttgat 34464176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 37956961 - 37957084
Alignment:
Q  55 tttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatct 154  Q
    ||||||| ||||||||||||||| |||||||||||||  | ||| |||||||| |||||||||||||| |||||||| ||||||||||||||| |||||     
T  37956961 tttggtcccttaattaatttcaaattttcattttggtcccataagtaataaaattcatgttttggtcccttaattgtctctccgtcggtcaaagaaatc- 37957059  T
Q  155 ctgacggttacgtttaaccccaaat 179  Q
    ||||   ||| ||||||||||||||    
T  37957060 ctgaatattaagtttaaccccaaat 37957084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 7753640 - 7753435
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| | ||||||||||||| |||||||||||| | | ||| |||| ||| ||||||||| |||| |||||||| ||  |||||||    
T  7753640 ttaataggtcatttggtcccctaattaatttcaaattttcattttgg-tccataattaattaaactcatgtttttgtcccttaattgtctcctcgtcggt 7753542  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaatttaaacc 243  Q
    | ||||||||| ||   ||||  |||||| |||||||| ||||||| |  ||| ||    ||||||||| ||||||| |||||| |||||||||||||||    
T  7753541 ctaataaatctttgggtgttaactttaactccaaatgtatatggtggatcaacattgtaggtgatccaccatagaccgtattaattttttaatttaaacc 7753442  T
Q  244 gtttgat 250  Q
    | |||||    
T  7753441 gcttgat 7753435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 34513668 - 34513461
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| | ||||||||| | | |||||||||||||| | ||| |||||||| |||||||| ||||  |    | |  ||||||  ||    
T  34513668 ttaataggtcatttggtcccctaattaattaccaattttcattttggttccataattaataaaactcatgtttaggtctctcgggtttgcctccgttagt 34513569  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaaac 242  Q
    ||||||| || |||   |||| | |||||||||||||| ||||||  || ||| ||||||||||||||| ||||||||||||||  ||||||||||||||    
T  34513568 caaataattccctggtcgttaagcttaaccccaaatgtatatggttgaccaaccttaagagtgatccaccatagaccttattaatttttttaatttaaac 34513469  T
Q  243 cgtttgat 250  Q
    ||||||||    
T  34513468 cgtttgat 34513461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 33995949 - 33996057
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||| ||  | |||||||||||| ||||||||| |||| |||||| |  ||||||||||    
T  33995949 ttaataggtcatttggtcccttaattaattttaagttttcatttttgtc-cataactaataaaactcatgttttagtcccttaattttccctccgtcggt 33996047  T
Q  144 caaataaatc 153  Q
    ||||||||||    
T  33996048 caaataaatc 33996057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 250
Target Start/End: Original strand, 11547680 - 11547868
Alignment:
Q  64 ttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatctctgacggtt 163  Q
    |||| ||||||||||||||||||||||| || ||| ||||||||  ||||||||   || | | || |  || |||  |||||||||||| ||||| |||    
T  11547680 ttaaataatttcaagttttcattttggtctcataattaataaaacacatgttttaacccctcattttttccttcgtttgtcaaataaatc-ctgactgtt 11547778  T
Q  164 acgtttaaccccaaatg---tctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaatttaaaccgtttgat 250  Q
    | |||||||||||||||   |||||  || || ||| ||| ||||| ||||| ||||| | |||||||||| ||||||||||||||||||    
T  11547779 aagtttaaccccaaatgatgtctatcatggaccaaccttaggagtggtccaccatagatcgtattaaatttataatttaaaccgtttgat 11547868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 35061435 - 35061345
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattg 130  Q
    |||| |||||| ||||||||||| |||||||||||| ||||||||||||||| | | |||||||||||| ||| ||||| |||| |||||||    
T  35061435 aaggcttaataggtcatttggtcccttaattaatttgaagttttcattttgg-tccataactaataaaactcacgttttagtcccttaattg 35061345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 35904863 - 35904749
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| |||||| ||||||| |||  |||| ||||||| | ||||||||||||   | ||| |||||||| ||||||||||||||||||||| | ||||||    
T  35904863 aaggcttaataggtcatttagtcctttaaataatttctaattttcattttggccccataagtaataaaactcatgttttggtcctttaattctgtctccg 35904764  T
Q  139 tcggtcaaataaatc 153  Q
    || |||||| |||||    
T  35904763 tcagtcaaaaaaatc 35904749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 34147137 - 34147282
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| || || ||||||  |||||||||||||||  | ||| |||||||| |||||||||||||| | || |  | ||||| | ||    
T  34147137 ttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaactcatgttttggtccctcaagttcacctccgccagt 34147236  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtg 189  Q
    ||||||||||  ||   ||||  |||||||||||||||||||||||    
T  34147237 caaataaatccatgggtgttaactttaaccccaaatgtctatggtg 34147282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 34148475 - 34148366
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| || || ||||||  |||||||||||| ||| | ||| |||||||| |||||||||||||| | || |  | ||||||||||    
T  34148475 ttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtccctcaagttcacctccgtcggt 34148376  T
Q  144 caaataaatc 153  Q
    ||||||||||    
T  34148375 caaataaatc 34148366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 30749413 - 30749325
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaa 127  Q
    |||| ||||||||||||||| | || ||||||||||| |||||||||||| ||  | ||| |||||||| |||||||||||||| ||||    
T  30749413 aaggcttaataagtcatttgatttcctaattaatttccagttttcattttagtcccataattaataaaactcatgttttggtcccttaa 30749325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 2277574 - 2277439
Alignment:
Q  54 atttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatc 153  Q
    |||||||| || || ||||||| |||||||||||||||  | ||| |||||||| | |||||||||||| | || |  | ||| ||||||||||||||||    
T  2277574 atttggtccctcaaataatttccagttttcattttggtcccataagtaataaaacttatgttttggtccctcaagttcacctcagtcggtcaaataaatc 2277475  T
Q  154 tctgacggttacgtttaaccccaaatgtctatggtg 189  Q
      ||   ||||  |||||||||||||||||||||||    
T  2277474 catgggagttaactttaaccccaaatgtctatggtg 2277439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 242
Target Start/End: Original strand, 34512815 - 34513012
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| || |||||||| | ||||||||| | |||||||||||||||  | ||| |||||||| |||||||||| ||| | || | |  ||||||  ||    
T  34512815 ttaataggttatttggtcccctaattaattaccagttttcattttggtcccataattaataaaactcatgttttgatccctcaaatttgcctccgttagt 34512914  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaa-tttttaatttaaac 242  Q
    ||||||||||  |||| |||| |||||| ||  ||||| ||||||| |  |||  |||||||| ||||| ||| ||||||||||| ||||||||||||||    
T  34512915 caaataaatc-atgactgttaagtttaa-ccttaatgtatatggtggatcaaccataagagtggtccaccatataccttattaaattttttaatttaaac 34513012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 28611239 - 28611161
Alignment:
Q  172 ccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaatttaaaccgtttgat 250  Q
    |||||||||||||||||| ||  ||||||| | || ||||||||||| | |||||| | ||||||||||||||||||||    
T  28611239 ccccaaatgtctatggtggaccgactttaaaaatggtccactatagatcctattaattatttaatttaaaccgtttgat 28611161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 34467607 - 34467714
Alignment:
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaaac 242  Q
    |||||||||| ||| | |||  |||||||  |||||||||||| || || ||| ||||||||| ||||| ||| ||||||||||  ||||||||||||||    
T  34467607 caaataaatccctggctgttgagtttaacttcaaatgtctatgatggacaaaccttaagagtggtccaccataaaccttattaagttttttaatttaaac 34467706  T
Q  243 cgtttgat 250  Q
     |||||||    
T  34467707 tgtttgat 34467714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 37956919 - 37956966
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggt 91  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||||||    
T  37956919 ttaataggtcatttggtctcttaattaatttcaaatttttattttggt 37956966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 6030450 - 6030377
Alignment:
Q  178 atgtctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaaaccgtttgat 250  Q
    ||||||| |||| || ||| |||||||||||| || ||||| | |||||| |||||||||||||||||||||||    
T  6030450 atgtctacggtggaccaaccttaagagtgatctaccatagatcctattaatatttttaatttaaaccgtttgat 6030377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 32469285 - 32469358
Alignment:
Q  178 atgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||| ||||||| || ||||||||||||| ||||||||||| | |||||| | |||||||||||||| ||||||    
T  32469285 atgtatatggtggaccaactttaagagtggtccactatagatcctattaattattttaatttaaaccctttgat 32469358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 43033199 - 43033282
Alignment:
Q  161 gttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaacc 243  Q
    |||| |||||||| ||||||||||||||  || ||| ||||||||| ||||| ||| ||| |||||| | ||||||||||||||    
T  43033199 gttaagtttaacctcaaatgtctatggtagaccaaccttaagagtggtccaccataaaccctattaattattttaatttaaacc 43033282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 2276282 - 2276391
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| || || ||||||  |||||||||||| ||    ||| |||||||| |||||||||||||| | || |  | |||||| |||    
T  2276282 ttaataggtcatttggtccctcaaataattttcagttttcattttagtcctataagtaataaaactcatgttttggtccctcaagttcacctccgtaggt 2276381  T
Q  144 caaataaatc 153  Q
    ||||||||||    
T  2276382 caaataaatc 2276391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 46318732 - 46318526
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| |||||||||||  ||||||||||||||||||| ||||| ||  | ||||||||||||||||||||||||||| | ||||||||||||||| ||    
T  46318732 ttaataggtcatttggtcctttaattaatttcaagttttgatttttgtcccataactaataaaagtcatgttttggtccctcaattgtatctccgtctgt 46318633  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaac 242  Q
    ||||||||||  || | |||| ||||||||||||||||||||| || | | ||||| |||||| ||||| ||||| | |||||||| ||||||||||||     
T  46318632 caaataaatccttggctgttaagtttaaccccaaatgtctatgatgga-ttacttttagagtggtccaccatagatcctattaaatattttaatttaaat 46318534  T
Q  243 cgtttgat 250  Q
    ||||||||    
T  46318533 cgtttgat 46318526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 15746881 - 15746675
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| | ||||||||||| | |||||||||||||  | ||| |||||||| |||||||||||||| ||||||||||||||||| ||    
T  15746881 ttaataggtcatttggtcccctaattaatttccaattttcattttggtcccataagtaataaaactcatgttttggtcccttaattgtatctccgtcagt 15746782  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaatttaaacc 243  Q
    ||||||||||    || |||| |||||||  ||||||||||||||| || ||  ||||||||| ||||| ||||| | ||||||  ||||||||| ||||    
T  15746781 caaataaatcatccactgttaagtttaacttcaaatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaatcttttaattttaacc 15746682  T
Q  244 gtttgat 250  Q
     ||||||    
T  15746681 ctttgat 15746675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 46467142 - 46467353
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| |||||| |||| ||| ||  ||||||||||||||||||||||||||||  | |||||||||||| |||||||| ||||| | |  | |  |||||    
T  46467142 aaggcttaataggtcaattgatcctttaattaatttcaagttttcattttggtcccataactaataaaactcatgtttcggtccctcaggtttgcctccg 46467241  T
Q  139 tcggtcaaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaattt 238  Q
    |  |||||||||||| ||  | |||| ||||||||  |||||||||||||| || ||| |||| ||||||||||  ||||  ||||||||||||||||||    
T  46467242 tttgtcaaataaatccctcgctgttaagtttaaccataaatgtctatggtggaccaacattaaaagtgatccaccgtagatgttattaaatttttaattt 46467341  T
Q  239 aaaccgtttgat 250  Q
    ||||||||||||    
T  46467342 aaaccgtttgat 46467353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 10722502 - 10722416
Alignment:
Q  35 aaaaaaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtc 121  Q
    |||||||| ||||||||| |||||||||| |||||||||||||||||||||||| || || |||||| ||||| |||||||||||||    
T  10722502 aaaaaaggtttaataagttatttggtctcctaattaatttcaagttttcattttcgtctcataactagtaaaactcatgttttggtc 10722416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 35943445 - 35943354
Alignment:
Q  161 gttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaattt--aaaccgtttgat 250  Q
    |||| ||||||||| |||||||||||||| || ||| ||||||||||||||| |||||||||||||||||||| ||||  ||||||||||||    
T  35943445 gttaagtttaaccctaaatgtctatggtggaccaaccttaagagtgatccaccatagaccttattaaattttttattttaaaaccgtttgat 35943354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 227
Target Start/End: Complemental strand, 48097146 - 48096964
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||| |||   ||||||||||| | |||| ||||||||  | |||||||||||| ||||||||| |||| |||  | | |||||||||||    
T  48097146 ttaataggtcatttagtcctctaattaatttccaatttttattttggtcccataactaataaaactcatgttttagtcccttaggtttgtctccgtcggt 48097047  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa 227  Q
    |||||||||| || || |||| |||||||| ||||||| ||||||| || ||| ||||||||| || || ||||| | ||||||    
T  48097046 caaataaatccct-actgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaa 48096964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 20069994 - 20069899
Alignment:
Q  52 tcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaa 147  Q
    |||||||||| || ||||||||||  |||||||||||||| || || |||||||||  ||||||||||||||| |||| || ||||||||||||||    
T  20069994 tcatttggtccctcaattaatttcccgttttcattttggtctcatatctaataaaacacatgttttggtccttcaattataactccgtcggtcaaa 20069899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 15743277 - 15743386
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| || ||||||||   ||||||||||| | |||| |||||||| || ||| |||||||| |||||||||||||| || ||||||||||| || ||    
T  15743277 ttaataggttatttggtcctctaattaatttccaatttttattttggtctcataagtaataaaactcatgttttggtcccttgattgtatctccatcagt 15743376  T
Q  144 caaataaatc 153  Q
    ||||||||||    
T  15743377 caaataaatc 15743386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 10711778 - 10711861
Alignment:
Q  35 aaaaaaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttg 118  Q
    |||||||| ||| ||||| |||||||||| |||||||||| ||||||||||||| || || |||||| ||||| ||||||||||    
T  10711778 aaaaaaggtttagtaagttatttggtctcctaattaatttgaagttttcattttcgtctcataactagtaaaactcatgttttg 10711861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 42244632 - 42244728
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtc 140  Q
    |||||| |||||||||||  |||||||||||||| ||||||||||| |  | ||| |||||||| |||||||||||||| |||| |  |||||||||    
T  42244632 ttaataggtcatttggtcctttaattaatttcaaattttcattttgatcccataattaataaaactcatgttttggtcccttaagttgatctccgtc 42244728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 16123313 - 16123488
Alignment:
Q  69 taatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatctctgacggttacgtt 168  Q
    |||||| ||||||||||||||||| |  || |||||||| ||| ||||| |||| | | || |   |||||  | |||||||||| |||   |||| |||    
T  16123313 taatttaaagttttcattttggttccacaattaataaaattcacgttttagtccctcattttttcttccgtttgccaaataaatccctggttgttaagtt 16123412  T
Q  169 taaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttatt-aaatttttaatttaaacc 243  Q
    ||| | ||||||||||||||  || |||||||| |||||||||| ||| |||||||| ||||||||| ||||||||    
T  16123413 taatctcaaatgtctatggtagaccaactttaaaagtgatccaccatataccttattaaaatttttagtttaaacc 16123488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 7161474 - 7161396
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcc 122  Q
    |||||| |||||||| || ||||||||||||||| |||| |||||| | || ||| |||||||| ||||||||||||||    
T  7161474 ttaataggtcatttgttcccttaattaatttcaaatttttattttgatctcataagtaataaaattcatgttttggtcc 7161396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 41873969 - 41873879
Alignment:
Q  161 gttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattttt-aatttaaaccgtttgat 250  Q
    |||| |||||||| ||||||||||||||| || ||| ||||||||| ||||| |||||| | ||||| ||||| ||||| |||||||||||    
T  41873969 gttaagtttaaccacaaatgtctatggtggaccaaccttaagagtggtccaccatagacttcattaattttttaaattttaaccgtttgat 41873879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 3617489 - 3617429
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa 227  Q
    ||||||| |||||||||||||||||| ||| ||||||||| ||||||||||| | ||||||    
T  3617489 tttaacctcaaatgtctatggtgaaccaaccttaagagtggtccactatagatcctattaa 3617429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 12665915 - 12665998
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattt-ttaatttaaaccgtttgat 250  Q
    ||||||| ||||||| |||||||||| | ||| ||||||| ||||| ||||| |||||||| ||| |||||||||||||||||||    
T  12665915 tttaacctcaaatgtttatggtgaaccatctt-aagagtggtccaccatagatcttattaattttgttaatttaaaccgtttgat 12665998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 20064172 - 20064280
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| ||||||  |||||||||| || ||||||||||  ||||||||||||||  | || |||||||||  || |||||||||||| |||| || | |||    
T  20064172 aaggcttaatagctcatttggtccctcaattaatttcccgttttcattttggtcccatatctaataaaacacacgttttggtccttcaattataaccccg 20064271  T
Q  139 tcggtcaaa 147  Q
    |||||||||    
T  20064272 tcggtcaaa 20064280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 48527658 - 48527742
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||| |||||||||||||||  || ||||||||||||| ||||| ||||| ||||| || | ||||||||||||| |||||||    
T  48527658 tttaactccaaatgtctatggtcgaccaactttaagagtggtccaccatagatcttatcaattattttaatttaaactgtttgat 48527742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 52078128 - 52078052
Alignment:
Q  175 caaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||||||||||||||| ||| ||||||||||| ||| ||||| | |||||| | ||||||||| |||||||||||    
T  52078128 caaatgtctatggtgaaccaaccttaagagtgatacaccatagatcctattaattattttaattttaaccgtttgat 52078052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 41872705 - 41872780
Alignment:
Q  172 ccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaa-tttttaatttaaaccgtt 246  Q
    ||||||||||||||||||||| ||  |||||| |  | ||| ||||||||||||||| ||||||||||||||||||    
T  41872705 ccccaaatgtctatggtgaaccaatcttaagattagttcaccatagaccttattaaattttttaatttaaaccgtt 41872780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 42245983 - 42245924
Alignment:
Q  63 cttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcc 122  Q
    |||||||||||||||||||| ||||||||| | ||| |||||||| |||| |||||||||    
T  42245983 cttaattaatttcaagtttttattttggttccataattaataaaactcatcttttggtcc 42245924  T

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Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 45585099 - 45584915
Alignment:
Q  69 taatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatctctgacggttacgtt 168  Q
    ||||||||||||||||||||||| ||  || ||||||||   |  ||||||||||| | || |  ||||||  | |||||||||| ||||| |||| |||    
T  45585099 taatttcaagttttcattttggtctcacaattaataaaacgtaccttttggtccttcactttttcctccgtttgccaaataaatc-ctgaccgttaagtt 45585001  T
Q  169 taaccccaaatg---tctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||| ||||||||   |||||||||  | ||||||||||||| ||||| ||||| | |||||| | ||||||| |||| ||||||||    
T  45585000 taaacccaaatgatgtctatggtggcccaactttaagagtgctccaccatagatcctattaattattttaatataaatcgtttgat 45584915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 46468834 - 46468756
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcc 122  Q
    |||||| ||||||||||   |||||||||||||| |||| ||||||||  | |||||||||||| |||||||| |||||    
T  46468834 ttaataggtcatttggttctttaattaatttcaaatttttattttggtcccataactaataaaactcatgtttcggtcc 46468756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 24517600 - 24517525
Alignment:
Q  176 aaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa--atttttaatttaaaccgtttgat 250  Q
    ||||||||| ||||||||||| ||||||||  ||||||||||| | ||||||  |||||| ||||||||||||||||    
T  24517600 aaatgtctaaggtgaactaacattaagagttgtccactatagatcatattaatcattttt-atttaaaccgtttgat 24517525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 40109491 - 40109566
Alignment:
Q  176 aaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa--atttttaatttaaaccgtttgat 250  Q
    ||||||||| |||||| |||||||||||||  ||||||||||| | ||||||  |||||| ||||||||||||||||    
T  40109491 aaatgtctaaggtgaagtaactttaagagttgtccactatagatcatattaatcattttt-atttaaaccgtttgat 40109566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 5613076 - 5612993
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||||||||||| ||||||| |  | |||||| |||||||||| ||||| | |||||| | |||||||||||||||||||||    
T  5613076 tttaaccccaaatgtttatggtggatcacctttaa-agtgatccaccatagatcctattaattattttaatttaaaccgtttgat 5612993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 26286536 - 26286619
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||||||||||| ||||||| |  | |||||| |||||||||| ||||||  |||||| | |||||||||||||||||||||    
T  26286536 tttaaccccaaatgtttatggtggatcacctttaa-agtgatccaccatagactctattaattattttaatttaaaccgtttgat 26286619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 16965143 - 16965035
Alignment:
Q  143 tcaaataaatctctgacggttacgtttaaccccaaatg---tctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaattt 238  Q
    |||||||||| || || ||||| |||||||||||||||   | ||||||| || ||||||||||||| ||||| ||||| | |||||| | |||||||||    
T  16965143 tcaaataaat-tccgatggttaagtttaaccccaaatgatgtatatggtggaccaactttaagagtggtccaccatagatcctattaattattttaattt 16965045  T
Q  239 aaaccgtttg 248  Q
     |||||||||    
T  16965044 caaccgtttg 16965035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 26802073 - 26802148
Alignment:
Q  176 aaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaaaccgtttgat 250  Q
    ||||||||| ||||||| ||| ||||||||  ||||||||||| | ||||||   |||||||||||||||||||||    
T  26802073 aaatgtctaaggtgaaccaaccttaagagttgtccactatagatcatattaatcattttaatttaaaccgtttgat 26802148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 24499758 - 24499692
Alignment:
Q  56 ttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcc 122  Q
    |||||| | ||| ||||||||||||||||||||||| ||  || |||||||| ||| ||||||||||    
T  24499758 ttggtcccctaaataatttcaagttttcattttggtctcacaattaataaaactcacgttttggtcc 24499692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 46110384 - 46110489
Alignment:
Q  145 aaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattt-ttaatttaaacc 243  Q
    ||||||||||| ||| ||||  |||||| | |||| ||||||||| || ||| ||||||||| ||||   ||||||||||||| ||| ||||||| ||||    
T  46110384 aaataaatctc-gactgttaactttaactctaaatatctatggtggaccaaccttaagagtggtccatcgtagaccttattaattttgttaattttaacc 46110482  T
Q  244 gtttgat 250  Q
    |||||||    
T  46110483 gtttgat 46110489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 835258 - 835318
Alignment:
Q  56 ttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttt 116  Q
    |||||| | ||||||||||  ||||||||||||||| || |||||||||||| ||| ||||    
T  835258 ttggtcccctaattaatttgcagttttcattttggtctcataactaataaaactcacgttt 835318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 9633904 - 9633964
Alignment:
Q  175 caaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaa 235  Q
    |||||||||| ||||||| |  |||||  ||| ||||| ||||||||||||||||||||||    
T  9633904 caaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaatttttaa 9633964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 16963846 - 16963882
Alignment:
Q  55 tttggtctcttaattaatttcaagttttcattttggt 91  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  16963846 tttggtcttttaattaatttcatgttttcattttggt 16963882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 53432063 - 53432270
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||| |||| || |||||||||||||||||||||||||||||  | ||| |||||||| | |||||||||||| | || | |  || ||| |||    
T  53432063 ttaataggtcgtttgatcccttaattaatttcaagttttcattttggtcccataagtaataaaacttatgttttggtccctcaagtttgccttcgttggt 53432162  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattttt-aatttaaac 242  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||   ||| ||| |||||||||| ||||| ||||| |||    
T  53432163 caaataaatccctgacggttaagtttaaccccaaatgtctatggtgaaccaactttaagagtggctcaccatacaccttattaattttttcaattttaac 53432262  T
Q  243 cgtttgat 250  Q
    ||||||||    
T  53432263 cgtttgat 53432270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 250
Target Start/End: Complemental strand, 28591027 - 28590812
Alignment:
Q  37 aaaaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctc 136  Q
    |||||| |||||| || |||||||| ||||| ||||||| || ||||||||||||  | ||| |||||||| ||||||||||||||||||||||| |||     
T  28591027 aaaaggtttaataggttatttggtcccttaaataatttccagctttcattttggtcccataaataataaaactcatgttttggtcctttaattgtgtctt 28590928  T
Q  137 cgtcggtcaaataaatctctgacggttacgtttaaccccaaatgtc--tatggtgaactaactttaagagtgatccactatagaccttattaaat-tttt 233  Q
    ||| |||||||||||| | || | ||||  |||||||| |||||||  |||||||||| ||||||||||||||| ||  ||||| | |||||| | ||||    
T  28590927 cgttggtcaaataaat-tttgcccgttaaatttaaccctaaatgtctatatggtgaaccaactttaagagtgattcatcatagatcctattaattatttt 28590829  T
Q  234 aatttaaaccgtttgat 250  Q
    ||| ||||| |||||||    
T  28590828 aatataaactgtttgat 28590812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 250
Target Start/End: Complemental strand, 53435866 - 53435661
Alignment:
Q  46 aataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtca 145  Q
    |||| |||||||| || |||||||||||||||||||||||||||||  | ||| |||||||| ||||||||||| || | || | || |||||| |||||    
T  53435866 aataggtcatttgatcccttaattaatttcaagttttcattttggtcccataagtaataaaactcatgttttggcccctcaagtttacctccgttggtca 53435767  T
Q  146 aataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattttt-aatttaaaccg 244  Q
    ||||||||  ||||||||| |||||||   |||||||||||||  || ||| ||||||||| |||||  ||||| | ||||| ||||| ||||| |||||    
T  53435766 aataaatccttgacggttaagtttaactttaaatgtctatggtagaccaaccttaagagtggtccaccgtagacttcattaattttttaaattttaaccg 53435667  T
Q  245 tttgat 250  Q
    ||||||    
T  53435666 tttgat 53435661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 227
Target Start/End: Original strand, 40723228 - 40723411
Alignment:
Q  44 ttaataagtcatttggtctcttaattaattt--caagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcg 141  Q
    |||||| ||||||||||| | ||||||||||  ||| |||||||||||||  | |||||||||||| |||||||||||||| |||  | |||||||||||    
T  40723228 ttaataggtcatttggtcccctaattaattttgcaa-ttttcattttggtcccataactaataaaactcatgttttggtcccttaggtttatctccgtcg 40723326  T
Q  142 gtcaaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa 227  Q
    |||||||||||| |  || |||| |||||||| ||||||| ||||||| || ||| ||||||||| || || ||||| | ||||||    
T  40723327 gtcaaataaatc-catactgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaa 40723411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 13533380 - 13533170
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| |||||| |||||||||||   ||||||||||||||||||||| || ||| | ||||||| |||| |||||||||||||| | |  | | ||||||    
T  13533380 aaggcttaataggtcatttggtcctctaattaatttcaagttttcatcttagttccataactaaaaaaactcatgttttggtccctcacgtttgtctccg 13533281  T
Q  139 tcggtcaaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaacttta-agagtgatccactatagaccttattaaatttttaatt 237  Q
    ||||||||||||||| | ||| ||||  ||||||  ||||||||||||||| || ||| ||| ||| |  ||||| |||||||||||||| |||| ||||    
T  13533280 tcggtcaaataaatc-cagactgttaaatttaacttcaaatgtctatggtggaccaacattataga-tagtccaccatagaccttattaatttttcaatt 13533183  T
Q  238 taaaccgtttgat 250  Q
    | |||| ||||||    
T  13533182 ttaaccatttgat 13533170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 38698143 - 38698032
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| |||||||||||  |||| ||||||| | |||||||||||||  | || ||||||||||||||||||||||||||||| ||| |||||||| ||    
T  38698143 ttaataggtcatttggtcctttaaataatttccaattttcattttggtcccatatctaataaaagtcatgttttggtcctttaactgtgtctccgtctgt 38698044  T
Q  144 caaataaatctc 155  Q
    |||| |||||||    
T  38698043 caaaaaaatctc 38698032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 40724957 - 40724820
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| ||||||||||||  |||||| |||||| |  |  ||||||||||| |||||||||||||| |||| | | |||||||  ||    
T  40724957 ttaataggtcatttggtcccttaattaatttgcagtttttattttgatccc--aactaataaaactcatgttttggtcccttaagtttgtctccgttagt 40724860  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtct 183  Q
    ||||||||||  ||| ||||| |||||| |||||||||||    
T  40724859 caaataaatccatgatggttaagtttaatcccaaatgtct 40724820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 56085471 - 56085555
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||| ||||| | |||||| | |||||||||||||||||||||    
T  56085471 tttaaccccaaatgtctatggtggactaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 56085555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 1794510 - 1794621
Alignment:
Q  142 gtcaaataaatctctgacggttacgtttaaccccaaatg---tctatggtgaactaactttaagagtgatccactatagaccttattaaa-tttttaatt 237  Q
    |||||||||||| || ||||||| |||||| ||||||||   | ||||||| || ||| ||||||||| ||||| ||||||||||||||| |||||||||    
T  1794510 gtcaaataaatc-ctaacggttaagtttaatcccaaatgatgtatatggtggaccaaccttaagagtggtccaccatagaccttattaaattttttaatt 1794608  T
Q  238 taaaccgtttgat 250  Q
    |||||||||||||    
T  1794609 taaaccgtttgat 1794621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 6348254 - 6348362
Alignment:
Q  142 gtcaaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaa 240  Q
    ||||||||||| ||||| ||||| |||||||| ||||||||||||||| || ||| ||||||||| |||||  ||||||||||||| |||| |||||| |    
T  6348254 gtcaaataaat-tctgatggttaagtttaacctcaaatgtctatggtggaccaaccttaagagtggtccaccgtagaccttattaatatttctaatttta 6348352  T
Q  241 accgtttgat 250  Q
    ||| ||||||    
T  6348353 accctttgat 6348362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 13531754 - 13531810
Alignment:
Q  100 taataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatctct 156  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  13531754 taataaaactcatgttttggtcctttaattgtctctccgtcggtcaaaaaaatctct 13531810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 28589782 - 28589890
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| |||||||| || ||||| ||||||  |||||||||||||||  | ||| || ||||| | |||||||||| |||||||| | |||||||||||    
T  28589782 ttaataggtcatttgatcccttaaataattttcagttttcattttggtcccataagtattaaaacttatgttttggtactttaattatgtctccgtcggt 28589881  T
Q  144 caaataaat 152  Q
    |||||||||    
T  28589882 caaataaat 28589890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 13165594 - 13165703
Alignment:
Q  142 gtcaaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaa 240  Q
    ||||||||||||  |||| |||| |||||||  ||||| ||||||||| || ||| ||||||||| ||||| |||||| | ||||| | |||||||||||    
T  13165594 gtcaaataaatccttgactgttaagtttaacttcaaatttctatggtggaccaaccttaagagtggtccaccatagacttcattaattattttaatttaa 13165693  T
Q  241 accgtttgat 250  Q
    ||||||||||    
T  13165694 accgtttgat 13165703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 42810190 - 42810115
Alignment:
Q  172 ccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtt 246  Q
    ||||| ||||||||||||||| ||  ||||||||  ||||| |||||||||||||||| |||||||||||||||||    
T  42810190 ccccagatgtctatggtgaaccaatcttaagagtagtccaccatagaccttattaaattttttaatttaaaccgtt 42810115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 52963595 - 52963756
Alignment:
Q  69 taatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatctctgacggttacgtt 168  Q
    ||||||||||||||||||||||| ||  || |||||||    |||||||||||| | || | | |||||||  |||||||||||||| ||| ||||  ||    
T  52963595 taatttcaagttttcattttggtctcacaattaataaatcgtatgttttggtccctcaagtttttctccgtttgtcaaataaatctc-gactgttaactt 52963693  T
Q  169 taaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattt 231  Q
    |||| |||||||||||||||| || | | |||| |||| ||||  |||||||||  |||||||    
T  52963694 taactccaaatgtctatggtggaccagccttaaaagtggtccatcatagaccttcataaattt 52963756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 38695544 - 38695653
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| || |||||||| ||||| ||||||  | ||||||||||| |  | || ||||||||| ||||||||||||||||||| ||| ||||||||  |    
T  38695544 ttaataggttatttggtcccttaaataattttcaattttcattttgatcccatatctaataaaaatcatgttttggtcctttaactgtctctccgtctat 38695643  T
Q  144 caaataaatc 153  Q
    |||| |||||    
T  38695644 caaaaaaatc 38695653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 52240013 - 52240086
Alignment:
Q  178 atgtctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaaaccgtttgat 250  Q
    |||||||||||| || ||| ||||||||| ||||| ||||| | |||||| |||||||||||||||||||||||    
T  52240013 atgtctatggtggaccaaccttaagagtggtccaccatagatcctattaatatttttaatttaaaccgtttgat 52240086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 13531146 - 13531193
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggt 91  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||    
T  13531146 ttaataggtcatttggacccttaattaatttcaagttttcattttggt 13531193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 668387 - 668465
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcc 122  Q
    ||||||||||||||| ||    |||||||||  ||||||||||||||| || |||||||||||| ||| ||||||||||    
T  668387 ttaataagtcatttgatcctccaattaattttcagttttcattttggtctcataactaataaaactcacgttttggtcc 668465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 8682841 - 8682756
Alignment:
Q  166 gtttaaccccaaatgtctatggtgaactaact-ttaagagtgatccactatagaccttattaaatttttaatttaaaccgtttgat 250  Q
    ||||||| |||||||||||||||| ||||| | ||||||||| ||||  ||||| | |||||| |||||||||| |||| ||||||    
T  8682841 gtttaacaccaaatgtctatggtggactaaatcttaagagtggtccatcatagatcatattaattttttaatttcaaccctttgat 8682756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 41349511 - 41349436
Alignment:
Q  176 aaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa--atttttaatttaaaccgtttgat 250  Q
    ||||||||| |||||||||||||||||||   ||||||||||| | ||||||  |||||| ||||||||||||||||    
T  41349511 aaatgtctaaggtgaactaactttaagagatgtccactatagatcatattaatcattttt-atttaaaccgtttgat 41349436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 250
Target Start/End: Complemental strand, 13166784 - 13166677
Alignment:
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaaac 242  Q
    ||||||||||  |||| |||| |||||||  |||||||||||| || || |||  |||||||||||||| |||||  | ||||| ||||| ||||| |||    
T  13166784 caaataaatccttgactgttaagtttaacttcaaatgtctatgatggaccaaccgtaagagtgatccaccatagaattcattaatattttaaattttaac 13166685  T
Q  243 cgtttgat 250  Q
    ||||||||    
T  13166684 cgtttgat 13166677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 26629904 - 26629998
Alignment:
Q  156 tgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||||||  ||||||||||||||| |||||||||| ||| ||||||||| ||||| ||||  | |||||| | ||||||| ||||| |||||||    
T  26629904 tgacggttaactttaaccccaaatgtttatggtgaaccaac-ttaagagtggtccaccataggtcctattaattattttaatgtaaactgtttgat 26629998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 54866594 - 54866559
Alignment:
Q  215 tagaccttattaaatttttaatttaaaccgtttgat 250  Q
    ||||||||||||| ||||||||||||||||||||||    
T  54866594 tagaccttattaattttttaatttaaaccgtttgat 54866559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 27850918 - 27850845
Alignment:
Q  178 atgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||||||||| || ||| |||| |||| ||||| ||||| | |||||| | |||||||||||||||||||||    
T  27850918 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 27850845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 1519935 - 1520018
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||||||||||| ||||||  |  | |||||| |||||||||| ||||| | |||||| | |||||||||||||||||||||    
T  1519935 tttaaccccaaatgtttatggtagatcacctttaa-agtgatccaccatagatcctattaattattttaatttaaaccgtttgat 1520018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 11438582 - 11438538
Alignment:
Q  145 aaataaatctctgacggttacgtttaaccccaaatgtctatggtg 189  Q
    |||||||||||||||  ||| ||||||||||||||||||| ||||    
T  11438582 aaataaatctctgacttttaagtttaaccccaaatgtctacggtg 11438538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 14524216 - 14524260
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcatttt 88  Q
    ||||||||||| || |||||||||||||||| || ||||||||||    
T  14524216 ttaataagtcacttagtctcttaattaattttaacttttcatttt 14524260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 15450078 - 15449984
Alignment:
Q  158 acggttacgtttaaccccaaatgt---ctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaaaccgtttg 248  Q
    ||||||| ||||||| ||||||||   |||| ||| || ||| ||||||||| ||||| ||||| | |||||| ||||||||||||||| |||||    
T  15450078 acggttaagtttaactccaaatgttgtctatcgtggaccaaccttaagagtggtccaccatagatcctattaatatttttaatttaaactgtttg 15449984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 796 - 589
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| |||||||||||   ||||||||||| |||||||||||||||  | |||||||||||| |||||||||||||| | || | | |||| ||||||    
T  796 ttaataggtcatttggtcctctaattaatttccagttttcattttggtcccataactaataaaactcatgttttggtccctcaagtttgtctctgtcggt 697  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaac 242  Q
    |||||||||| ||||  || | |||||||| ||||||| |||  || || ||| ||||||||| ||||| |||||||||||||||| |||||||||||||    
T  696 caaataaatccctgattgtcaagtttaacctcaaatgtatataatggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaac 597  T
Q  243 cgtttgat 250  Q
    ||||||||    
T  596 cgtttgat 589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 127434 - 127637
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| | ||||||||||||||||||| |||||||  | |||||||||||| |||||||||||||| | |  | |  ||||||||||    
T  127434 ttaataggtcatttggtcccctaattaatttcaagttttcgttttggtcccataactaataaaactcatgttttggtccctcatgtttgcctccgtcggt 127533  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaaac 242  Q
    |||||||||| ||||| ||||  ||||||| |||||||||||||||||  ||| ||||||||| ||||| ||||| | ||||||  ||||||||||||||    
T  127534 caaataaatccctgacagttaactttaacctcaaatgtctatggtgaaacaaccttaagagtggtccaccatagatcctattaatgtttttaatttaaac 127633  T
Q  243 cgtt 246  Q
    ||||    
T  127634 cgtt 127637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 128706 - 128597
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||||||    | |||||||||| |||||||||||||| |||| | | |||||||||||    
T  128706 ttaataggtcatttggtcccttaattaattttaagttttcattttggtcctattactaataaaactcatgttttggtcccttaaatttgtctccgtcggt 128607  T
Q  144 caaataaatc 153  Q
    |||| |||||    
T  128606 caaaaaaatc 128597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 42877620 - 42877825
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| || |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| | |  | | ||| |||| ||    
T  42877620 ttaataggttatttggtctcttaattaatttcaagttttcattttggtctcataactaataaaactcatgttttggtccctcacgtttgtcttcgtcagt 42877719  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaatttaaacc 243  Q
    |||||||||| | ||||||||  ||||||||||||||| ||||||| || ||| |||||| || ||||| ||||| | |||||| | |||||||| ||||    
T  42877720 caaataaatc-ccgacggttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattatttaatttcaacc 42877818  T
Q  244 gtttgat 250  Q
     ||||||    
T  42877819 ctttgat 42877825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 14841019 - 14840807
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| |||||| || ||||||||| || ||||||||||| |||||||||||||  | |||||||||||| |||||||||||||| | |  | | ||||||    
T  14841019 aaggtttaataggttatttggtcttttgattaatttcaaattttcattttggtaccataactaataaaattcatgttttggtccctcatatttgtctccg 14840920  T
Q  139 tcggtcaaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaa-tttttaatt 237  Q
    ||  ||||||||||||||     ||| |||||||| ||||||||||||||| || ||| |||| |||||||||| ||||  ||||||||| |||||||||    
T  14840919 tctatcaaataaatctctcgttcttaagtttaaccacaaatgtctatggtggaccaacattaaaagtgatccaccatagttcttattaaattttttaatt 14840820  T
Q  238 taaaccgtttgat 250  Q
    |||||||||||||    
T  14840819 taaaccgtttgat 14840807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 41743735 - 41743586
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| |||||| |||||||||||  ||||||||||| ||||||||||||||||  | ||| |||||||| | ||||||||||||||||||||| ||||||    
T  41743735 aaggcttaataggtcatttggtcctttaattaattttaagttttcattttggtcccataagtaataaaacttatgttttggtcctttaattgtttctccg 41743636  T
Q  139 tcggtcaaataaatctctgacggttacgtttaaccccaaatgtctatggt 188  Q
    ||||||||| |||||||  || |||| ||||||| |||| || |||||||    
T  41743635 tcggtcaaaaaaatctcacactgttaagtttaactccaagtgcctatggt 41743586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 38696309 - 38696516
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| | ||||||||| | |||||||||| |||||||||||||||| || |||||||||||| |||||||||||||| | || | |  ||||||||||    
T  38696309 ttaataggccatttggtcccctaattaattttaagttttcattttggtctcataactaataaaactcatgttttggtccctcaagtttgcctccgtcggt 38696408  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttt-taatttaaac 242  Q
    |||||||||| ||  |  ||| ||||||||| |||||||||||||  || ||| |||| |||| ||||| ||||| || ||||| |||| |||||| |||    
T  38696409 caaataaatcccttgctattaagtttaaccctaaatgtctatggtagaccaaccttaaaagtggtccaccatagatctaattaatttttataattttaac 38696508  T
Q  243 cgtttgat 250  Q
    | ||||||    
T  38696509 cctttgat 38696516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 45394976 - 45395113
Alignment:
Q  52 tcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaa 151  Q
    ||||||| || |||||||||||| |||||||||||||| |  | ||| |||||||| ||||||||||||   |||||||| |||| |||| |||||||||    
T  45394976 tcatttgatcccttaattaattttaagttttcattttgatcccataattaataaaactcatgttttggttacttaattgtctctctgtcgatcaaataaa 45395075  T
Q  152 tctctgacggttacgtttaaccccaaatgtctatggtg 189  Q
    || ||||||||||  |||||| |||||| |||||||||    
T  45395076 tccctgacggttaactttaactccaaatatctatggtg 45395113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 22551124 - 22551214
Alignment:
Q  161 gttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttt-taatttaaaccgtttgat 250  Q
    |||| |||||||||||||| ||||||||| || ||| |||| |||||||||| ||| ||||||||||||||| ||||||||||||||||||    
T  22551124 gttaagtttaaccccaaatctctatggtggacaaaccttaaaagtgatccaccataaaccttattaaattttgtaatttaaaccgtttgat 22551214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 38697133 - 38697012
Alignment:
Q  32 aagaaaaaaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgt 131  Q
    ||||||| ||| ||||||  |||||||||| || |||||||||| |||||||||||||||  | |||||||||||| |||||||||| ||||| |  | |    
T  38697133 aagaaaataggcttaatagctcatttggtccctcaattaatttccagttttcattttggtcccataactaataaaactcatgttttgatccttcacattt 38697034  T
Q  132 atctccgtcggtcaaataaatc 153  Q
      ||||||||||||||||||||    
T  38697033 gcctccgtcggtcaaataaatc 38697012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 28734989 - 28735132
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttgg--tcctttaattgtatctccgtcg 141  Q
    |||||| |||||||| | || |||||||||| |||| |||||||||||| | ||| |||||||| |||||||||||  ||  |||||||| |  |||||     
T  28734989 ttaataggtcatttgatttcctaattaattttaagtgttcattttggttccataattaataaaactcatgttttggtctcacttaattgtcttcccgtca 28735088  T
Q  142 gtcaaataaatctctgacggttacgtttaaccccaaatgtctat 185  Q
    |||||||||||||  |||  ||| ||||||||||||||||||||    
T  28735089 gtcaaataaatctgagactattaagtttaaccccaaatgtctat 28735132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 8571614 - 8571524
Alignment:
Q  161 gttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaa-tttttaatttaaaccgtttgat 250  Q
    |||| |||||||||||||||||||||||| || |||||||| | || ||||| ||| ||||||||||| |||||||||||||| |||||||    
T  8571614 gttaagtttaaccccaaatgtctatggtggaccaactttaaaaatggtccaccatataccttattaaactttttaatttaaactgtttgat 8571524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 10669437 - 10669353
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||| |||||||||||||||||| ||| ||||||||| ||||| ||||| | |||||||| ||||||||||||||| |||||    
T  10669437 tttaacctcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcctattaaatattttaatttaaaccgattgat 10669353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 42878936 - 42878859
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttt 116  Q
    |||| |||||| ||||||||||| | |||||||||||||||||||||||||||  | |||||||| ||| ||||||||    
T  42878936 aaggcttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaatgaaactcatgttt 42878859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 45437602 - 45437462
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| |||||| |||||||| || | ||||||||||||||||||||||||| |  | ||| |||||||| |||||||||||||| |    | |  |||||    
T  45437602 aaggcttaataggtcatttgatcccctaattaatttcaagttttcattttgatcccataattaataaaactcatgttttggtccctcgtgtttgcctccg 45437503  T
Q  139 tcggtcaaataaatctctgacggttacgtttaaccccaaat 179  Q
       |||||||||||| ||||| |||| ||||||||||||||    
T  45437502 ctagtcaaataaatccctgactgttaagtttaaccccaaat 45437462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 32798622 - 32798439
Alignment:
Q  69 taatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatctctgacggttacgtt 168  Q
    |||||||||||||||||||||||  |  || ||||||||   |  |||| |||| | |||| | |||||||  |||||||||||| || ||||||| |||    
T  32798622 taatttcaagttttcattttggtcccacaattaataaaacgtaccttttagtccctcaattttttctccgtttgtcaaataaatc-ctcacggttaagtt 32798524  T
Q  169 taaccccaa--atgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||| | ||  |||||||||||| |  ||| ||||||||| ||||| ||||| | |||||| | |||||||||||||||||||||    
T  32798523 taactcaaatgatgtctatggtggatcaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 32798439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 42870924 - 42871023
Alignment:
Q  155 ctgacggttacgtttaaccccaaa---tgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttt-taatttaaaccgtttgat 250  Q
    ||||| |||| |||||||||||||   ||||||| ||| || ||  ||||||||| |||||  |||||||||||||||||| ||||||||||||||||||    
T  42870924 ctgactgttaagtttaaccccaaaagatgtctattgtggaccaatcttaagagtggtccaccgtagaccttattaaattttgtaatttaaaccgtttgat 42871023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 17702378 - 17702243
Alignment:
Q  56 ttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtc--aaataaatc 153  Q
    |||||| ||||||||||||| | |||||||||||||  | ||||||||||||   |||||||||||| | || |  |||||| |  |||  ||| |||||    
T  17702378 ttggtcccttaattaatttccaattttcattttggtcccataactaataaaacctatgttttggtccctcaagttcatctccatttgtcaaaaagaaatc 17702279  T
Q  154 tctgacggttacgtttaaccccaaatgtctatggtg 189  Q
    |||||| ||||  ||||||| |||||||||||||||    
T  17702278 tctgaccgttaactttaacctcaaatgtctatggtg 17702243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 20180666 - 20180582
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||||| |||||||||| ||| |||||| ||||||||| ||||| ||||| | |||||| | |||||||| ||||||||||||    
T  20180666 tttaaccctaaatgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgat 20180582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 24192655 - 24192571
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||||| |||||||||||||| || ||| ||||||||| ||||| ||||| | |||||| | |||||||| ||||||||||||    
T  24192655 tttaaccctaaatgtctatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgat 24192571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 9854866 - 9854787
Alignment:
Q  172 ccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||||||||||||||| || ||||||||||||| ||||| ||||| | |||||| | || ||||||||||| ||||||    
T  9854866 ccccaaatgtctatggtggaccaactttaagagtggtccaccatagatcctattaattcttctaatttaaaccatttgat 9854787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 236
Target Start/End: Complemental strand, 42872291 - 42872113
Alignment:
Q  57 tggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatctct 156  Q
    ||||| ||||| |||||| |||||||||||||  | || |||  |||||||   | ||||| |||||| | || |  ||||||  |||||||||||| ||    
T  42872291 tggtcccttaaataattttaagttttcattttaatctcataatgaataaaacgtacgttttagtccttcactttttcctccgtttgtcaaataaatc-ct 42872193  T
Q  157 gacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaat 236  Q
    ||||||||  ||||||| ||||||||||||||  || ||| ||||||||| || || ||||| | |||||| ||||||||    
T  42872192 gacggttaactttaacctcaaatgtctatggtagaccaaccttaagagtggtctaccatagatcctattaattttttaat 42872113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 31845795 - 31845703
Alignment:
Q  158 acggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||||  |||||||||||||||||||||||||| ||| ||||||||| ||||| ||||  | |||||| | ||||||| ||||| |||||||    
T  31845795 acggttaactttaaccccaaatgtctatggtgaaccaac-ttaagagtggtccaccataggtcctattaattattttaatgtaaactgtttgat 31845703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 32695280 - 32695181
Alignment:
Q  155 ctgacggttacgtttaaccccaaatg---tctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||| |||| |||||||||||||||   |||||||||||| ||  |||||| || ||||| ||||| | |||||| | |||||||||||||||||||||    
T  32695280 ctgaccgttaagtttaaccccaaatgatgtctatggtgaaccaatcttaagattggtccaccatagatcctattaattattttaatttaaaccgtttgat 32695181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 41742089 - 41742146
Alignment:
Q  65 taattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcc 122  Q
    |||||||||||||||||||||||| ||||  ||| |||||||| | ||||||||||||    
T  41742089 taattaatttcaagttttcattttagttttataattaataaaatttatgttttggtcc 41742146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 6398460 - 6398425
Alignment:
Q  215 tagaccttattaaatttttaatttaaaccgtttgat 250  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6398460 tagaccttattaattttttaatttaaaccgtttgat 6398425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 17339512 - 17339477
Alignment:
Q  215 tagaccttattaaatttttaatttaaaccgtttgat 250  Q
    ||||||||||||| ||||||||||||||||||||||    
T  17339512 tagaccttattaattttttaatttaaaccgtttgat 17339477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 34504743 - 34504677
Alignment:
Q  56 ttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcc 122  Q
    |||||||| ||||||||||  |||||| ||||| || || ||||||||||||  |||||||||||||    
T  34504743 ttggtctcctaattaattttcagtttttattttagtctcataactaataaaacacatgttttggtcc 34504677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 6397906 - 6397990
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaaaccgtttgat 250  Q
    |||||| ||||||  ||||||| ||| ||| || | |||| ||||| ||||||||||||||  ||||||||||||||| ||||||    
T  6397906 tttaactccaaataactatggtaaaccaacctttacagtggtccaccatagaccttattaatttttttaatttaaaccatttgat 6397990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 13367045 - 13366961
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaa-tttttaatttaaaccgtttgat 250  Q
    |||||||  ||||||||| ||||||| |||||||   ||| ||||| |||||||||||||||  ||||| ||| |||||||||||    
T  13367045 tttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaaccttttatttttaaccgtttgat 13366961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 30786801 - 30786885
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattt-ttaatttaaaccgtttgat 250  Q
    |||||| | |||||||||||||| |  |||||||| |||| ||||  ||| |||||||||| ||| ||||||| |||||||||||    
T  30786801 tttaactctaaatgtctatggtggatcaactttaaaagtggtccatcataaaccttattaattttgttaattttaaccgtttgat 30786885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 8521256 - 8521461
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||  | |||||||||||| |||||||||||||| | |  | | |||||||| ||    
T  8521256 ttaataggtcatttggtcccttaattaatttcaagttttcattttggtcccataactaataaaactcatgttttggtccctcacgtttgtctccgtcagt 8521355  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaatttaaacc 243  Q
    |||||||||| | ||||||||  ||||||||||||||| ||||||| || ||| |||||| || ||||| ||||| | |||||| | |||||||| ||||    
T  8521356 caaataaatc-ccgacggttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattatttaatttcaacc 8521454  T
Q  244 gtttgat 250  Q
     ||||||    
T  8521455 ctttgat 8521461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 1010479 - 1010274
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||||||  | |||||||||||| |||||||||||||| | |  | | |||||||| ||    
T  1010479 ttaataggtcatttggtcccttaattaatttcaagtttttattttggtcccataactaataaaactcatgttttggtccctcacgtttgtctccgtcagt 1010380  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaatttaaacc 243  Q
    |||||||||| | ||||||||  ||||||||||||||| ||||||| || ||| ||||||||| ||| | ||||| | |||||| | |||||||| ||||    
T  1010379 caaataaatc-ccgacggttaactttaaccccaaatgtgtatggtggaccaaccttaagagtggtccgccatagatcctattaattatttaatttcaacc 1010281  T
Q  244 gtttgat 250  Q
     ||||||    
T  1010280 ctttgat 1010274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 9169587 - 9169793
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtc-atgttttggtcctttaattgtatctccgtcgg 142  Q
    |||||| ||||||||| | |||||||||||||||||||||||||| ||  | ||| |||||||| || ||||||||||| ||||||||| ||||||||||    
T  9169587 ttaataggtcatttggccccttaattaatttcaagttttcattttagtcccataattaataaaactctatgttttggtcttttaattgtctctccgtcgg 9169686  T
Q  143 tcaaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaacttta-agagtgatccactatagaccttattaaatttttaatttaaa 241  Q
    ||||||||||| ||||  ||||  ||||||||||||||||||| ||| || ||  ||| ||| || ||||  ||||||| |||||| |||| ||||||||    
T  9169687 tcaaataaatccctga-agttaactttaaccccaaatgtctatagtggaccaatattataga-tggtccatcatagaccgtattaatttttaaatttaaa 9169784  T
Q  242 ccgtttgat 250  Q
    | |||||||    
T  9169785 cagtttgat 9169793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 8523866 - 8523731
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| |||||| ||||||||||| | |||||||||||||||||||||||||||  | |||||||||||| |||||||||| ||||| |  | | ||||||    
T  8523866 aaggcttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaataaaactcatgttttgatccttcatgtttgtctccg 8523767  T
Q  139 tcggtcaaataaatctctgacggttacgtttaacccc 175  Q
    || |||||||||||| ||||| ||||  |||||||||    
T  8523766 tcagtcaaataaatc-ctgacagttaactttaacccc 8523731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 1009185 - 1009295
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||  | |||||||||||||||||||||||||||| | |||||||||||| |||||||||||| ||| |  | | ||||| || ||    
T  1009185 ttaataggtcatttggttccctaattaatttcaagttttcattttggttccataactaataaaactcatgttttggttcttcatgtttgtctccatcagt 1009284  T
Q  144 caaataaatct 154  Q
    |||||||||||    
T  1009285 caaataaatct 1009295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 189
Target Start/End: Original strand, 32757821 - 32757971
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| |||||| ||||||||||| || || ||||||| |||||||||||||||  | ||| |||||||| |||||||||||||| | || |  | |||||    
T  32757821 aaggtttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataaataataaaactcatgttttggtccctcaagttcacctccg 32757920  T
Q  139 tcggtcaaataaatctctgacggttacgtttaaccccaaatgtctatggtg 189  Q
     ||||||||||||||  ||   ||||  |||||||||||||||||||||||    
T  32757921 ccggtcaaataaatccatgggtgttaactttaaccccaaatgtctatggtg 32757971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 1102742 - 1102826
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||||||||||||||||||  || ||| ||||||||| ||||| ||||| |||||||| | |||||||||||||||||||||    
T  1102742 tttaaccccaaatgtctatggtagaccaaccttaagagtggtccaccatagatcttattaattattttaatttaaaccgtttgat 1102826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 26047814 - 26047917
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| |||||||||||   ||||||||||||| |||| |||||||| || |||||||||||| ||||||||| |||| | ||||||  ||||||| ||    
T  26047814 ttaataggtcatttggtcctctaattaatttcaaatttttattttggtctcataactaataaaactcatgttttagtccctcaattgtccctccgtctgt 26047913  T
Q  144 caaa 147  Q
    ||||    
T  26047914 caaa 26047917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 22308797 - 22308707
Alignment:
Q  161 gttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||| |||||||||||||||||||||||| ||  || ||||||||| ||||| |||||| ||||||||| ||||||| |||||| ||||||    
T  22308797 gttaagtttaaccccaaatgtctatggtggacctaccttaagagtggtccaccatagacattattaaattttttaatgtaaaccatttgat 22308707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 32759168 - 32759054
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| |||||| ||||||||||| || || ||||||  |||||||||||| ||| | ||| |||||||| |||||||||||||| | || |  | |||||    
T  32759168 aaggcttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtccctcaagttcacctccg 32759069  T
Q  139 tcggtcaaataaatc 153  Q
    |||||||||||||||    
T  32759068 tcggtcaaataaatc 32759054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 250
Target Start/End: Complemental strand, 33173975 - 33173867
Alignment:
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattttt--aatttaaa 241  Q
    ||||||||||  || | |||| |||||||||||||||||||||||| || ||| ||||||||| || || |||||| | ||||| |||||  ||||| ||    
T  33173975 caaataaatccttggctgttaagtttaaccccaaatgtctatggtggaccaaccttaagagtggtctaccatagacttcattaatttttttaaattttaa 33173876  T
Q  242 ccgtttgat 250  Q
    |||||||||    
T  33173875 ccgtttgat 33173867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 27705296 - 27705223
Alignment:
Q  178 atgtctatggtgaactaactttaagagtgatccactatagaccttattaa-atttttaatttaaaccgtttgat 250  Q
    |||||||||||| || ||| |||| |||| ||||| ||||| | |||||| |||||||||||||||||||||||    
T  27705296 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaatatttttaatttaaaccgtttgat 27705223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 30859176 - 30859078
Alignment:
Q  156 tgacggttacgtttaaccccaaatg---tctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||| |||| |||||||||||||||   ||||||||| || ||  ||||||||| ||||| ||||| | |||||| | |||||||||||||||||||||    
T  30859176 tgaccgttaagtttaaccccaaatgatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 30859078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 22047746 - 22047780
Alignment:
Q  57 tggtctcttaattaatttcaagttttcattttggt 91  Q
    ||||| |||||||||||||||||||||||||||||    
T  22047746 tggtcccttaattaatttcaagttttcattttggt 22047780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 11846376 - 11846323
Alignment:
Q  54 atttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaa 107  Q
    |||||||| ||||||||||||  || |||||||||||| || ||||||||||||    
T  11846376 atttggtcccttaattaatttacaggtttcattttggtctcataactaataaaa 11846323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 324163 - 324223
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaa 227  Q
    |||||| | |||||||||||||| || |||||||| |||| ||||  ||||||||||||||    
T  324163 tttaactctaaatgtctatggtggaccaactttaatagtggtccatcatagaccttattaa 324223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 325178 - 325094
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattt-ttaatttaaaccgtttgat 250  Q
    |||||| | |||||||||||||| || ||| |||| |||| ||||   ||||||||||||| ||| ||||||| |||||||||||    
T  325178 tttaactctaaatgtctatggtggaccaaccttaatagtggtccatcgtagaccttattaattttgttaattttaaccgtttgat 325094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 39603965 - 39604063
Alignment:
Q  156 tgacggttacgtttaaccccaaatg---tctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||| |||| |||||||||||||||   ||||||||  || ||| |||| |||||||||| ||||| | |||||| | ||||||||||||| |||||||    
T  39603965 tgactgttaagtttaaccccaaatgatgtctatggtagaccaaccttaaaagtgatccaccatagatcctattaattattttaatttaaactgtttgat 39604063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 3455740 - 3455533
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| |  |||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |  | | |||||||| ||    
T  3455740 ttaataggtcatttggtccccgaattaatttcaagttttcattttggtctcataactaataaaactcatgttttggtccttcatgtttgtctccgtcagt 3455641  T
Q  144 caaataaatctctgacggttacgtttaacccc---aaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaatttaa 240  Q
    |||||||||| ||||| ||||  |||||||||   |||||| ||||||| || ||| ||||||||| ||||| ||||| | |||||| | |||||| | |    
T  3455640 caaataaatc-ctgacagttaactttaaccccccaaaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattatttaatctca 3455543  T
Q  241 accgtttgat 250  Q
    ||| ||||||    
T  3455542 accctttgat 3455533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 42684977 - 42685084
Alignment:
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaa-tttttaatttaaac 242  Q
    ||||||||||  |||| |||| ||||||||||||||||||||||||||| ||  ||||||||| ||||| ||| ||||||||||| ||||||||||||||    
T  42684977 caaataaatccttgactgttaagtttaaccccaaatgtctatggtgaaccaagcttaagagtggtccaccataaaccttattaaattttttaatttaaac 42685076  T
Q  243 cgtttgat 250  Q
    ||||||||    
T  42685077 cgtttgat 42685084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 53420440 - 53420525
Alignment:
Q  166 gtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaa-tttttaatttaaaccgtttgat 250  Q
    |||||||| ||||||||||||||| || |||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||    
T  53420440 gtttaaccacaaatgtctatggtggaccaactttaaaagtgatccaccatagaccttattaaactttttaatttaaactgtttgat 53420525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 192
Target Start/End: Complemental strand, 28909699 - 28909574
Alignment:
Q  65 taattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatctctgacggtta 164  Q
    ||||||||||  |||||||||||||||  | |||||||||||| |||||||||||||| | |  | | ||||||| |||||||||||||||||||  |||    
T  28909699 taattaattttcagttttcattttggtcccataactaataaaactcatgttttggtccctcacgtttgtctccgttggtcaaataaatctctgac--tta 28909602  T
Q  165 cgtttaaccccaaatgtctatggtgaac 192  Q
     |||||||||||||| ||| ||||||||    
T  28909601 agtttaaccccaaatatctgtggtgaac 28909574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 243
Target Start/End: Complemental strand, 20288340 - 20288139
Alignment:
Q  43 attaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcgg 142  Q
    ||||||| | ||||||||| | ||||||||||  ||||||||||||| |  | ||| |||||||| |||||| ||||||| | || | | |||| ||  |    
T  20288340 attaataggccatttggtcccctaattaatttttagttttcattttgatcccataattaataaaactcatgtgttggtccctcaagtttgtctctgttag 20288241  T
Q  143 tcaaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaacttta-agagtgatccactatagaccttattaaatt-tttaatttaa 240  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||||||| || ||| ||| ||| |  ||||| |||||||||||||| || ||||||||||    
T  20288240 tcaaataaatccctgactgttaagtttaactccaaatgtctatggtggaccaacattataga-tattccaccatagaccttattaatttatttaatttaa 20288142  T
Q  241 acc 243  Q
    |||    
T  20288141 acc 20288139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 43174826 - 43174712
Alignment:
Q  39 aaggattaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccg 138  Q
    |||| |||||| ||||||||||| |||| ||||||| ||||||||||||||    | |||||||||||| |||||||||||||| | || | ||||||||    
T  43174826 aaggtttaatatgtcatttggtcccttatttaattttaagttttcattttgaccccataactaataaaactcatgttttggtccctcaaatctatctccg 43174727  T
Q  139 tcggtcaaataaatc 153  Q
    ||  |||||||||||    
T  43174726 tcaatcaaataaatc 43174712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 10301058 - 10301142
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||| ||||| |||||||||||| ||| ||||||||||||||| ||||| | |||||| | ||||||||||||| |||||||    
T  10301058 tttaacctcaaatatctatggtgaaccaaccttaagagtgatccaccatagatcctattaattattttaatttaaactgtttgat 10301142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 24403261 - 24403392
Alignment:
Q  65 taattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatctctgacggtta 164  Q
    |||||||||||||||||||||| |||| || ||| |||||||| | |||||||||||| | || |  | ||||||  ||||| ||||||  ||   ||||    
T  24403261 taattaatttcaagttttcattatggtctcataattaataaaatttatgttttggtccctcaagttcacctccgtttgtcaagtaaatccatgtttgtta 24403360  T
Q  165 cgtttaaccccaaatgtctatggtgaactaac 196  Q
      |||||||| |||||||||||||||||||||    
T  24403361 actttaaccctaaatgtctatggtgaactaac 24403392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 55328405 - 55328342
Alignment:
Q  59 gtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcc 122  Q
    ||||| ||||||||||||||||||||||||| | || ||| |||||||| ||||||||| ||||    
T  55328405 gtctcctaattaatttcaagttttcattttgatctcataattaataaaattcatgttttagtcc 55328342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 48083351 - 48083428
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaacc 243  Q
    ||||||| ||||||||||||||| |||||| ||||||||| || || ||||| | |||||| | ||||||||||||||    
T  48083351 tttaaccacaaatgtctatggtgcactaaccttaagagtggtctaccatagatcctattaattattttaatttaaacc 48083428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 250
Target Start/End: Original strand, 3208506 - 3208693
Alignment:
Q  65 taattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaatctctgacggtta 164  Q
    ||||||||||| | |||||||||||||  | ||| ||||||||   | |||||| ||| ||| || |  ||||||  |||||||||||| || || ||||    
T  3208506 taattaatttccatttttcattttggtcccataattaataaaacgtacgttttgatcccttattttttcctccgtttgtcaaataaatc-cttaccgtta 3208604  T
Q  165 cgtttaaccccaaatg--tctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
     |||||||||||||||    ||||||| || ||| ||||||||| ||||| ||| | | |||||| | || ||||||||||||||||||    
T  3208605 agtttaaccccaaatgatattatggtggaccaaccttaagagtggtccaccataaatcctattaattattataatttaaaccgtttgat 3208693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 14745192 - 14745108
Alignment:
Q  167 tttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||||||||| ||| ||||| || ||| ||||||||| | ||| ||||| | |||||| | ||||||||||||| |||||||    
T  14745192 tttaaccccaaatatctgtggtggaccaaccttaagagtggttcaccatagatcctattaattattttaatttaaactgtttgat 14745108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 43173887 - 43173963
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggt 120  Q
    |||||| |||||||| || | ||||||||||| | |||||||||||    | |||||||||||| ||||||||||||    
T  43173887 ttaataggtcatttgatcccctaattaatttccaattttcattttgtccccataactaataaaattcatgttttggt 43173963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 124070 - 124175
Alignment:
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaatttttaatttaaacc 243  Q
    |||||||||| || ||||||| |||||||||||||| ||||||||| || ||| ||||||||| ||||| ||||| | ||||||||| |||||||||| |    
T  124070 caaataaatc-cttacggttaagtttaaccccaaatatctatggtggaccaaccttaagagtggtccaccatagatcgtattaaattgttaatttaaatc 124168  T
Q  244 gtttgat 250  Q
    |||||||    
T  124169 gtttgat 124175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 250
Target Start/End: Complemental strand, 125248 - 125138
Alignment:
Q  144 caaataaatctctgacggttacgtttaaccccaaatg---tctatggtgaactaactttaagagtgatccactatagaccttattaaat--ttttaattt 238  Q
    |||||||||| || ||||||| |||||||||||||||   | |||| || || ||| |||| |||| ||||| ||||||||||||||||  |||||||||    
T  125248 caaataaatc-ctaacggttaagtttaaccccaaatgatgtatatgatggaccaaccttaaaagtggtccaccatagaccttattaaatttttttaattt 125150  T
Q  239 aaaccgtttgat 250  Q
    ||||| ||||||    
T  125149 aaaccctttgat 125138  T

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Target: scaffold1251 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 1200 - 1055
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggt 143  Q
    |||||| ||||||||||| || || ||||||| |||||||||||||||  | ||| |||||||| |||||||||||||| | || |  | ||||||| ||    
T  1200 ttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataagtaataaaactcatgttttggtccctcaaattcacctccgtcagt 1101  T
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtg 189  Q
    |||||||||   ||   ||||  |||||||||||||||||||||||    
T  1100 caaataaattcatgggtgttaactttaaccccaaatgtctatggtg 1055  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 32505786 - 32505876
Alignment:
Q  161 gttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattttt--aatttaaaccgtttgat 250  Q
    |||| ||||||||||||||||||||  || || ||| ||||||||| ||||| ||||||||||||||||||||  | |||||||||||||||    
T  32505786 gttaagtttaaccccaaatgtctataatggac-aacattaagagtggtccaccatagaccttattaaattttttaagtttaaaccgtttgat 32505876  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 16208533 - 16208633
Alignment:
Q  52 tcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtcctttaattgtatctccgtcggtcaaataaa 151  Q
    |||||||||| ||||| ||||||  | |||| ||||||||  | || ||||||||||||||||||||||||||||| ||| |||  ||| |||||| |||    
T  16208533 tcatttggtcccttaaataattttcaatttttattttggtcccatatctaataaaagtcatgttttggtcctttaactgtgtcttagtctgtcaaaaaaa 16208632  T
Q  152 t 152  Q
    |    
T  16208633 t 16208633  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 7308562 - 7308515
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggt 91  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||    
T  7308562 ttaataggtcatttggccccttaattaatttcaagttttcattttggt 7308515  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 7311705 - 7311632
Alignment:
Q  178 atgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||||||||||| ||| ||||||||| ||||| ||| | | |||||| | |||||||||||||||||||||    
T  7311705 atgtctatggtgaaccaaccttaagagtggtccaccataaatcctattaattattttaatttaaaccgtttgat 7311632  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 6702834 - 6702799
Alignment:
Q  215 tagaccttattaaatttttaatttaaaccgtttgat 250  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6702834 tagaccttattaattttttaatttaaaccgtttgat 6702799  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 7308354 - 7308401
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggt 91  Q
    |||||| || ||||||||  ||||||||||||||||||||||||||||    
T  7308354 ttaataggttatttggtcatttaattaatttcaagttttcattttggt 7308401  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 17837732 - 17837825
Alignment:
Q  161 gttacgtttaaccccaaatg---tctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||| |||||||||||||||   ||||||||| || ||| ||||||||| ||||| ||||| | |||||| | ||||||||| |||||||||||    
T  17837732 gttaagtttaaccccaaatgatgtctatggtggacaaacattaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgat 17837825  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 29381730 - 29381637
Alignment:
Q  161 gttacgtttaaccccaaatg---tctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||| |||||||||||||||   ||| ||||| || ||| ||||||||||||||| ||||| | |||||| | ||||||||| |||||||||||    
T  29381730 gttaagtttaaccccaaatgatgtctgtggtggacaaaccttaagagtgatccaccatagatcctattaattattttaatttcaaccgtttgat 29381637  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 12784707 - 12784789
Alignment:
Q  44 ttaataagtcatttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggtccttta 126  Q
    ||||||||| ||||| || ||||||||||||  || ||| || ||||| || ||| |||||||| ||||||||| ||||||||    
T  12784707 ttaataagttatttgatcccttaattaatttttagattttatgttggtctcataattaataaaattcatgttttagtccttta 12784789  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 32507041 - 32506979
Alignment:
Q  144 caaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtg 206  Q
    ||||||||||  |||| |||| |||||||||||||| ||||||||| || ||| |||||||||    
T  32507041 caaataaatccttgactgttaagtttaaccccaaatatctatggtggaccaaccttaagagtg 32506979  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 12669825 - 12669898
Alignment:
Q  145 aaataaatctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactataga 218  Q
    |||||||||||| || ||||  ||||||| ||||||| ||||||| || ||| ||||||||| ||||| |||||    
T  12669825 aaataaatctctaactgttaactttaacctcaaatgtgtatggtggaccaaccttaagagtggtccaccataga 12669898  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 18346722 - 18346657
Alignment:
Q  186 ggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    ||||||| ||| ||||||||| ||||||||| | | |||||| | |||||||||||||||||||||    
T  18346722 ggtgaaccaaccttaagagtggtccactataaatcctattaattattttaatttaaaccgtttgat 18346657  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 1367510 - 1367550
Alignment:
Q  142 gtcaaataaatctctgacggttacgtttaaccccaaatgtc 182  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  1367510 gtcaagtaaatctctgatggttaagtttaaccccaaatgtc 1367550  T

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Target: scaffold0118 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 43580 - 43481
Alignment:
Q  155 ctgacggttacgtttaaccccaa---atgtctatggtgaactaactttaagagtgatccactatagaccttattaaat-ttttaatttaaaccgtttgat 250  Q
    |||||||||| ||||||||||||   |||||||||||| || ||  ||||||||| ||||| ||||| | |||||| | |||||||||||||||||||||    
T  43580 ctgacggttaagtttaaccccaagtgatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 43481  T

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Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 32583 - 32780
Alignment:
Q  54 atttggtctcttaattaatttcaagttttcattttggtttcttaactaataaaagtcatgttttggt-cctttaattgtatctccgtcggtcaaataaat 152  Q
    |||||||| | |||||||||||||||||| ||||||||  | |||||||||||| || ||||||||| ||  |  |||  ||||| |||| |||||||||    
T  32583 atttggtcccgtaattaatttcaagtttttattttggtcacataactaataaaactcgtgttttggtgcccatgtttg--tctccatcggccaaataaat 32680  T
Q  153 ctctgacggttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagacc---ttattaaatttttaatttaaaccgtttga 249  Q
    | || || ||||  |||||||  |||||||||||||| || ||| ||| ||||| ||||  ||||| |   |||||   |||||||||||||||||||||    
T  32681 c-ctaactgttaactttaaccttaaatgtctatggtggaccaaccttaggagtggtccatcatagatcctattattttttttttaatttaaaccgtttga 32779  T

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Target: scaffold0201 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 21245 - 21335
Alignment:
Q  161 gttacgtttaaccccaaatgtctatggtgaactaactttaagagtgatccactatagaccttattaaattttt-aatttaaaccgtttgat 250  Q
    |||| |||||||| ||||||||||||||| || ||| || |||||| ||||| |||||| | ||||| ||||| ||||| |||||||||||    
T  21245 gttaagtttaaccacaaatgtctatggtggaccaaccttcagagtggtccaccatagacttcattaattttttaaattttaaccgtttgat 21335  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 334196 - 334150
Alignment:
Q  66 aattaatttcaagttttcattttggtttcttaactaataaaagtcat 112  Q
    ||||||||||||||||||||||| ||| | |||||||||||| ||||    
T  334196 aattaatttcaagttttcattttagttccataactaataaaactcat 334150  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 44903 - 44857
Alignment:
Q  66 aattaatttcaagttttcattttggtttcttaactaataaaagtcat 112  Q
    ||||||||||||||||||||||| ||| | |||||||||||| ||||    
T  44903 aattaatttcaagttttcattttagttccataactaataaaactcat 44857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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