View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2716_low_12 (Length: 241)
Name: NF2716_low_12
Description: NF2716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2716_low_12 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: scaffold0246 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 23752 - 23537
Alignment:
| Q |
18 |
aagtgggataatttttcactttgtaataatgagttaggtccaatcacaattctaggagttcgtatcacggattctcctaccacagtgatgatggttaaca |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23752 |
aagtgggagaatttttcactttgtaataatgagttaggtccaatcacaattctaggagttcgtatcacagattctcctaccacagtgatgatggttaaca |
23653 |
T |
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| Q |
118 |
tgacaattagagatgatcaaacaataatgtgtaatataattcgttgatgttgaattatcgtcaaccacgaaattactaagttcaaaaatctatttttgtg |
217 |
Q |
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||||||||| | ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
23652 |
tgacaattata-atgatcaaacaatgatgtgtaatataatttgttgatgttgaattatcgtcaaccacaaaattactaagtttaaaaatctatttttgtg |
23554 |
T |
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| Q |
218 |
attttaaaatgaatata |
234 |
Q |
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||||||||||||||||| |
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| T |
23553 |
attttaaaatgaatata |
23537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 40485813 - 40485598
Alignment:
| Q |
18 |
aagtgggataatttttcactttgtaataatgagttaggtccaatcacaattctaggagttcgtatcacggattctcctaccacagtgatgatggttaaca |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40485813 |
aagtgggagaatttttcactttgtaataatgagttaggtccaatcacaattctaggagttcgtatcacagattctcctaccacagtgatgatggttaaca |
40485714 |
T |
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| Q |
118 |
tgacaattagagatgatcaaacaataatgtgtaatataattcgttgatgttgaattatcgtcaaccacgaaattactaagttcaaaaatctatttttgtg |
217 |
Q |
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||||||||| | ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
40485713 |
tgacaattata-atgatcaaacaatgatgtgtaatataatttgttgatgttgaattatcgtcaaccacaaaattactaagtttaaaaatctatttttgtg |
40485615 |
T |
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| Q |
218 |
attttaaaatgaatata |
234 |
Q |
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||||||||||||||||| |
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| T |
40485614 |
attttaaaatgaatata |
40485598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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